GgaEX0016410 @ galGal4
Exon Skipping
Gene
ENSGALG00000010956 | TTC21B
Description
tetratricopeptide repeat domain 21B [Source:HGNC Symbol;Acc:HGNC:25660]
Coordinates
chr7:19159512-19161030:+
Coord C1 exon
chr7:19159512-19159669
Coord A exon
chr7:19160427-19160511
Coord C2 exon
chr7:19160932-19161030
Length
85 bp
Sequences
Splice sites
3' ss Seq
CATGCTTTGTTTGGTTTTAGACT
3' ss Score
9.33
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GCACAGTATTTTGAGATCCGACAGAATTATTCAGGAGCTCTGGAAATGGTGAACCAGATAATTGCAAACTTTCCAAACTTCATTCCTGCTTTCATAAAGAAAATGAAGCTGCAACTAGCCTTGCAGGACTGGGAGCAGGCAGTTGAAACTGCACATAG
Seq A exon
ACTATTGCAGAAAGATGCTCTCAATTTAGAGGCCACAAGAATGGAGGCCCTGCATTTTCTGTGCAGAGAAGGAAAGATGCGTGAG
Seq C2 exon
GCTTCGGCAAGACTAAGTGACCTCATTAAAGCATTGGACAGGTTGGAGCCGCGTAATTCACAGCTCTTCTATAAAATGGCTTTAGCTTTCAGTAGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010956_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGAGCTCTGGAAATGGTGA
R:
GCTCCAACCTGTCCAATGCTT
Band lengths:
177-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]