HsaEX6016380 @ hg38
Exon Skipping
Gene
ENSG00000123607 | TTC21B
Description
tetratricopeptide repeat domain 21B [Source:HGNC Symbol;Acc:HGNC:25660]
Coordinates
chr2:165931758-165941184:-
Coord C1 exon
chr2:165941027-165941184
Coord A exon
chr2:165932973-165933057
Coord C2 exon
chr2:165931758-165931856
Length
85 bp
Sequences
Splice sites
3' ss Seq
ACTAAATTGTTTTCCTGCAGGTT
3' ss Score
10.27
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GCACAATGCCTTGAGATGCGCCAGAATTATTCAGGTGCCCTGGAGACTGTGAACCAGATAATCGTGAATTTTCCGAGCTTCCTTCCTGCTTTTGTTAAGAAAATGAAATTACAACTAGCCTTGCAGGATTGGGACCAGACAGTTGAGACAGCACAAAG
Seq A exon
GTTGCTGCTCCAAGATAGCCAAAATGTGGAAGCACTGAGAATGCAGGCACTCTACTATGTGTGTAGAGAGGGGGATATAGAGAAG
Seq C2 exon
GCTTCCACCAAGCTGGAAAACTTGGGAAATACATTGGATGCCATGGAACCACAGAATGCTCAACTTTTCTATAACATTACACTCGCCTTCAGCAGAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123607-'12-12,'12-11,17-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.003 A=0.000 C2=0.030
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000243344fB7382
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGGAGACTGTGAACCAGA
R:
CTGTGGTTCCATGGCATCCAA
Band lengths:
175-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains