BtaEX6009392 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016512 | TTC21B
Description
Bos taurus tetratricopeptide repeat domain 21B (TTC21B), mRNA. [Source:RefSeq mRNA;Acc:NM_001102108]
Coordinates
chr2:30450105-30456869:+
Coord C1 exon
chr2:30450105-30450262
Coord A exon
chr2:30455603-30455687
Coord C2 exon
chr2:30456771-30456869
Length
85 bp
Sequences
Splice sites
3' ss Seq
AACTGAAATTTTTTTTGCAGGTT
3' ss Score
8.38
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GCACAATGCCTTGAGATGCGCCAGAATTATTCAGGTGCTCTGGAGACTGTGAACGAGATAATCATGAATTTTCCAAGTTTCCTTCCTGCTTTTGTAAAGAAAATGAAACTACAGCTAGCTTTGCAGGACTGGGACCAGACGGTTGAGACAGCACAGAG
Seq A exon
GTTGATGCTGCAAGATAATCAGAATTTGGAAGCACTGAGAATGCTGGCCCTTTACTATTTGTGTAGGGAGGGGGATATAGAGAAG
Seq C2 exon
GCTGCCACCCAGCTGGAAAACTTAGGAAATGCGTTGGATGCCGTGGAACCACAGAATGCTCAACTGTTTTATACGATCACAATAGCCTTCAGCAGAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016512-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTCTGGAGACTGTGAACG
R:
ATTCTGTGGTTCCACGGCATC
Band lengths:
181-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]