GgaINT0048238 @ galGal4
Intron Retention
Gene
ENSGALG00000010956 | TTC21B
Description
tetratricopeptide repeat domain 21B [Source:HGNC Symbol;Acc:HGNC:25660]
Coordinates
chr7:19160427-19161030:+
Coord C1 exon
chr7:19160427-19160511
Coord A exon
chr7:19160512-19160931
Coord C2 exon
chr7:19160932-19161030
Length
420 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
ATAATTGATTTTTCTTTAAGGCT
3' ss Score
6.04
Exon sequences
Seq C1 exon
ACTATTGCAGAAAGATGCTCTCAATTTAGAGGCCACAAGAATGGAGGCCCTGCATTTTCTGTGCAGAGAAGGAAAGATGCGTGAG
Seq A exon
GTGAGTCTTGTTGGTTGCAGACAGTTGAGCAGAATACAACCTTTGTTAGGAGTTAGATCCCACATTCACAATATGCTTTCGGTCTTCCTCCTCGTATACTGTGTTCATATTATACTGAAGCCCTAGCAAGATGTACAGATCTTGCTTGATGGGATTCTTCCATCAGCTCAGATTCAGCTCAAATTATTCACTTTTTGTAGAATATTTAAGGATATACAATGATCTGTTTTATTCTCTTTACTAATCAATGTATTTTTCTAGAAATTCCAGTGTTTTAGAAGATCGATGTAACTTCTATCTCTGAACACCGCTGAATATAAGTTGCAAAATACTGTTATGCAGTGAAATGGTTTTAGTGCATTTTATGTAGTGGTCCTAATCTGTTAATTCTTTCAATTATATAATTGATTTTTCTTTAAG
Seq C2 exon
GCTTCGGCAAGACTAAGTGACCTCATTAAAGCATTGGACAGGTTGGAGCCGCGTAATTCACAGCTCTTCTATAAAATGGCTTTAGCTTTCAGTAGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010956:ENSGALT00000038446:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTATTGCAGAAAGATGCTCTCA
R:
TGTTCTACTGAAAGCTAAAGCCA
Band lengths:
184-604
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]