MmuINT0167074 @ mm10
Intron Retention
Gene
ENSMUSG00000034848 | Ttc21b
Description
tetratricopeptide repeat domain 21B [Source:MGI Symbol;Acc:MGI:1920918]
Coordinates
chr2:66237787-66239607:-
Coord C1 exon
chr2:66239523-66239607
Coord A exon
chr2:66237886-66239522
Coord C2 exon
chr2:66237787-66237885
Length
1637 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
TACTGTTTATTTTGTCTTAGGCT
3' ss Score
7.73
Exon sequences
Seq C1 exon
GCTGCTGCTTCAAGACAATCACAACGTGGAGGCGCTGAGGATGCTGGCTCTGTATTATCTGTGTAGGGAAGGGGACGTAGAGAAG
Seq A exon
GTAAATTGTCTTGTGTAACATAAGCCACCTATGTCAAGGTGAATTTCATCACACACTGTTATCAATGCACGAGGGCGTATTCATTCGAAGCTCGAAGTTCTATCTCAGAATGTTTACTATGGGTTTTAATTGGTTGCCAGAACATTACAAAGACTTTAGCTTCCTGTACCAGCTAGTAAAGCAAAAGTATGCGGGGAAATTTCTCTCGAATGTTTTTAGATTATTAATAAGAGTGCATGTATTTTTACATAAGATGCTGGTACATAGTGTTGTATGTGATCTAGACATGAATATACATATCTAGAATCACAGTACGTTTGCAGCTTAGTTGAGTTTGTGTGAGTTAACTGAGCTTAGCGTGAAATCTTTATAACAATTACACCTGTTTCATTGCTACTGCACTCACCCAGTAGACGCTGGCGAAGGATTGCAAAATCTAATCTGTAGCCAAGGGTGGTGTACGAGAGGTCTGCATGTTTAACTTGGCTAATGTAACAGTACTTTAGTAGGCACTAGAAGAATCTTAGTGGATCAAATCTTCTATGAACTTGTTGTTTATTACTTGAGGCTGGGACTACAGCTCAGTGGGAGAGAGGTTTGCCTAGTATGTGCAAGCCTGATTCTCAGCCCCAAAAGAAACAAACCAGGAACAACAACAAAAAATATTTGTACTAATTACTTTCAAGATTTTCCTATTGTAGAAACCATTTCAATGCTGGGCACTCCAAAGGTGCATGTAACATTTTTGTAACTAGATTATCACTCCAACAACCTTTGTGGCATGACTTCATTATTGTAGAGCTCAATATGTTCACTTGTTGAATAACTATGGCTATCTTTACCCATCTAAAAGCTTTTATTCAGTGATGGGTATTAGCAAGAAGTAATTATGTGTAATTACTGGAGCTTTTTAAAAAGCAGAGACACTTTAGATTCCATTTGGGGGATCTAGGAAAACAATCAGTATGTAGATTCTGTACAGTCATGAAGACTTGAATTTGGATCTCTCGAACCCATAAAATGTTAGGCGTGATGGCCCATGCTTATATTTCTAGCACTGGGGAAGGAGTCACAGGAAGATACCGAGAGCTCACTTACCAGCCAGTCCTGCAGAATGAATAAACTCCAGATTCGGTGAGAGATCCTCTCTCACCTCTCTCAAAAGTAACTTCTGACTTCTATACACCGACATGTACATACAAAAACCATGTGCACACAAACATTTGCTCATGCATACACTTCACTACAGTGCGCGGGTGCACACACACACATACACACACACACACACTAGATGGAAGATATTTGTGAAAACAAAGGTCTCTTAAATTATGAGTAATGGGGGCTGGAGAGATGGCTCAGTGGTGATGAGTACTTTGTTGCTCTTGAAGAAGATGGATACACTTCCCAGCATCCCCATGGCAGCATACAATTAACTGTAGCAACAGTTTCAGGGGGTCTAGCATCCTCTTCTGGCTTCCACAGGTATCAGGCACATACGTGGTGTGTATACATACATTCAGGCAGTCACATATGCACATAAAATAAAAATAAGTAAATCTTTAAAAATATATAAGTCATAGTATATTAGAGTATGTATTCATGAATTAAATACTTTTTTACTGTTTATTTTGTCTTAG
Seq C2 exon
GCTGCTACCAAGCTGGAAAATTTAGGAAATGCATTGGATGTCATGGAACCACAGAATGCTCAACTTTTTTATAAGATTACACTAGCCTTCAGCAGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034848:ENSMUST00000102718:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTGCTTCAAGACAATCAC
R:
CGTTCTGCTGAAGGCTAGTGT
Band lengths:
184-1821
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types