GgaINT0048238 @ galGal3
Intron Retention
Gene
ENSGALG00000010956 | TTC21B
Description
NA
Coordinates
chr7:21137196-21137789:+
Coord C1 exon
chr7:21137196-21137270
Coord A exon
chr7:21137271-21137690
Coord C2 exon
chr7:21137691-21137789
Length
420 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
ATAATTGATTTTTCTTTAAGGCT
3' ss Score
6.04
Exon sequences
Seq C1 exon
AAAGATGCTCTCAATTTAGAGGCCACAAGAATGGAGGCCCTGCATTTTCTGTGCAGAGAAGGAAAGATGCGTGAG
Seq A exon
GTGAGTCTTGTTGGTTGCAGACAGTTGAGCAGAATACAACCTTTGTTAGGAGTTAGATCCCACATTCACAATATGCTTTCGGTCTTCCTCCTCGTATACTGTGTTCATATTATACTGAAGCCCTAGCAAGATGTACAGATCTTGCTTGATGGGATTCTTCCATCAGCTCAGATTCAGCTCAAATTATTCACTTTTTGTAGAATATTTAAGGATATACAATGATCTGTTTTATTCTCTTTACTAATCAATGTATTTTTCTAGAAATTCCAGTGTTTTAGAAGATCGATGTAACTTCTATCTCTGAACACCGCTGAATATAAGTTGCAAAATACTGTTATGCAGTGAAATGGTTTTAGTGCATTTTATGTAGTGGTCCTAATCTGTTAATTCTTTCAATTATATAATTGATTTTTCTTTAAG
Seq C2 exon
GCTTCGGCAAGACTAAGTGACCTCATTAAAGCATTGGACAGGTTGGAGCCGCGTAATTCACAGCTCTTCTATAAAATGGCTTTAGCTTTCAGTAGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010956:ENSGALT00000017831:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF145591=TPR_19=PD(19.7=52.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]