BtaINT0154329 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016512 | TTC21B
Description
Bos taurus tetratricopeptide repeat domain 21B (TTC21B), mRNA. [Source:RefSeq mRNA;Acc:NM_001102108]
Coordinates
chr2:30455603-30456869:+
Coord C1 exon
chr2:30455603-30455687
Coord A exon
chr2:30455688-30456770
Coord C2 exon
chr2:30456771-30456869
Length
1083 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
ACTGAATACTTTTGTTTTAGGCT
3' ss Score
7
Exon sequences
Seq C1 exon
GTTGATGCTGCAAGATAATCAGAATTTGGAAGCACTGAGAATGCTGGCCCTTTACTATTTGTGTAGGGAGGGGGATATAGAGAAG
Seq A exon
GTAAGTTGTATTGTACTATATAACTTTTCTGTATTAAATATATGTTTAGTTACACACACATGCACATACTAAAGAGCCTTGAAGTGCTTTTAGAGTGTATATCATGGCAATTTTTAGTTGACTCCTAGAAATATACCTTAACAAAGGTGGGTATCTTAAATCACCTAGTAAAGCAAAAGTATCATATAGTTAAAATTACCCTTGAAAGCTTTAAAAATTATTAATTACAGCAGATGCTGTTTCTATGTAAAAGTCATGTGTCATATGATATATGATTAATGTAACAAGTGGTACTGGTTATAGAAGAGAACATACAAAATATAATTCATAGTACTTTTACAATTTTATTGAGTTTGCATAAGTTAAATGGGTTAGGATGAAATCCCATTGAACCTTATAAGGCACACGTTTCTCTGGTAATGAACACATTGACTATATATTTTGGTTTATGGGATGCCAAAATCCACTCTGAAATCAATAATATTATAACAGATAATAGATTTAGACTCTTACCTAGGGTTAAATGGGTTAATGTGATAGTACCTAGTAAGTACTTCAGTAAATACTAGAAGAATCTTAGTAGGAGCATATCTGGAGTAAATTTTCCAGGAATTGAAATTATTTTTCAATTATCTGATTTTTTTGATCTCAAAAATATTTTAAATATAATCCAGGCTATGTAGGTAATCCAAGAACTGACCTCATATAATACTAATGTTTGTAAATAAGTTATCATTCATATCTCATATGTGTCATAAATTATTGGAGAGGGAGCTTGGCATGTATAGTTAACTGGATATTATAGGTGTCTTTGAATATTTGGATATCACCCAAAGGTTTCTATTCAGTAACAACTATTAAAGAAGCACATTTTATAATGCAATTTTTACTTATAATCATTGTACTTTTTATGGAAGGATCCTTTACCTTCTTGTACCATATGATTTCATTGGAAGAAGGGGAATTGATAAAAGCAAAGATTTTTTTAACATATAAATACTAATTTACTAATGTACATGTCATGTATTATGCTATTTTTATTCTTAGTGTATTTTAAGATTATACTGAATACTTTTGTTTTAG
Seq C2 exon
GCTGCCACCCAGCTGGAAAACTTAGGAAATGCGTTGGATGCCGTGGAACCACAGAATGCTCAACTGTTTTATACGATCACAATAGCCTTCAGCAGAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016512:ENSBTAT00000005682:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGATGCTGCAAGATAATCAGA
R:
AGTTCTGCTGAAGGCTATTGTGA
Band lengths:
184-1267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]