GgaEX0016456 @ galGal4
Exon Skipping
Gene
ENSGALG00000010982 | NID1
Description
nidogen 1 [Source:HGNC Symbol;Acc:HGNC:7821]
Coordinates
chr3:37185084-37187973:+
Coord C1 exon
chr3:37185084-37185508
Coord A exon
chr3:37186363-37186512
Coord C2 exon
chr3:37187722-37187973
Length
150 bp
Sequences
Splice sites
3' ss Seq
CTGTCTGATGTTTTCTACAGTGT
3' ss Score
8.87
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
AAGCAGCAATGCTGGGAGACAAGGTGTCTGGGTGTTCGAGATTGGTAGCTCATCTGACACTATTGTGCCTGCCAAGGTCAGCAGTGTTCTGGCGAGCCTAGAGCCCAGTGAAGAAGACCAGGAGTTGACTTCAAAACCATTCATGTCAGACTATGGCTCCACTGAAATAAGACCACAGTACGTCACCAGTAGCACGGACAGTATAGAAGAGGATCAGCACGTTACATACAGTGTTCCTCAGTTAGCTGTGGAGGACTTTATAACTTCATACCAAGATGTAACAGGAACACCTTCAACTGAATCTTTTTATCGTCATCGAGAATTCCCAACAGCAAAAGCTCCACCTCGCCAGTTCCCAGCCCAGCAGTTCCCCCCACAGGGACCCCAGGTCATAGATGTGGAAGAATTTGATGAAACTGGTATAG
Seq A exon
TGTTCCGCTACCACACAGACATCCAACAGACCTGTGCTAACAATCGCCACCAGTGCTCTGTTCACGCTATTTGCAAAGATTACCCCAATGGATTTTGTTGCAGTTGTATTGCTGGATACAAAGGAAATGGCAGACAGTGTGTAGCAGAAG
Seq C2 exon
GTTCTCCTCAGAGAGTCAATGGGAAAGTCAAAGGACGAGTCTTCGTAGGAAATAACCCCGTTCCAGTTACATTTGAGAACACCGATCTCCACTCGTATGTTGTGATGAACCACGGACGTGCCTATACTGCTATCAGCACAATCCCAGAAGCTTTGGGTTATTCTTTACTGCCTCTTGCCTCTATTGGAGGCGTAATAGGGTGGATGTTTGCTGTGGAGCAGCAAGGATATAAAAATGGATTCAGCATTACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010982-'12-12,'12-10,13-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.441 A=0.015 C2=0.059
Domain overlap (PFAM):
C1:
PF061199=NIDO=PD(18.1=11.9)
A:
PF129472=EGF_3=WD(100=70.6),PF074747=G2F=PU(0.5=2.0)
C2:
PF074747=G2F=FE(42.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCAACAGCAAAAGCTCCAC
R:
CCAAAGCTTCTGGGATTGTGC
Band lengths:
258-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]