MmuEX6057316 @ mm9
Exon Skipping
Gene
ENSMUSG00000005397 | Nid1
Description
nidogen 1 [Source:MGI Symbol;Acc:MGI:97342]
Coordinates
chr13:13560498-13568677:+
Coord C1 exon
chr13:13560498-13560874
Coord A exon
chr13:13565047-13565196
Coord C2 exon
chr13:13568426-13568677
Length
150 bp
Sequences
Splice sites
3' ss Seq
CTTTTGTTTTTTCCAAACAGTAT
3' ss Score
9.41
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GAGCAGCAACGCTGGGCACCAGGGTGTGTGGGTGTTTGAGATTGGAAGTCCTGCTACCGCCAAGGGCGTGGTGTCTGCAGATGTGAACCTGGACCTGGACGACGATGGAGCAGACTATGAAGATGAAGATTATGACCTAGTAACCTCTCACCTTGGCCTGGAGGATGTAGCCACTCCCTCCCCCTCCCACAGTCCAAGAAGGGGATACCCTGACCCACACAATGTACCTAGGATCCTCTCTCCTGGCTATGAGGCTACAGAGAGACCCCGTGGAGTCCCCACTGAGAGGACCAGATCTTTCCAGCTGCCAGCGGAGAGGTTCCCTCAGCATCACCCCCAGGTCATTGATGTGGATGAAGTAGAGGAAACAGGAGTTG
Seq A exon
TATTCAGCTACAACACAGGTTCCCAGCAGACTTGTGCCAACAATAGACACCAGTGCTCCGTGCATGCAGAGTGCAGAGACTATGCTACTGGCTTCTGCTGCAGGTGTGTGGCCAACTACACAGGCAATGGCAGACAGTGCGTGGCAGAAG
Seq C2 exon
GCTCTCCACAACGGGTCAATGGCAAGGTGAAGGGAAGGATCTTCGTGGGGAGCAGCCAGGTCCCCGTGGTGTTTGAGAACACTGACCTGCACTCCTATGTGGTGATGAACCACGGGCGCTCTTACACAGCCATCAGCACCATCCCTGAAACCGTCGGCTACTCTCTGCTCCCCCTGGCACCCATTGGAGGCATCATCGGATGGATGTTTGCAGTGGAGCAGGATGGGTTCAAGAATGGGTTTAGCATCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005397-'4-6,'4-4,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.646 A=0.059 C2=0.035
Domain overlap (PFAM):
C1:
PF061199=NIDO=PD(18.3=13.4)
A:
PF129472=EGF_3=WD(100=70.6),PF074747=G2F=PU(0.5=2.0)
C2:
PF074747=G2F=FE(42.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCAGATCTTTCCAGCTGCC
R:
AGAGAGTAGCCGACGGTTTCA
Band lengths:
255-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: