RnoEX0059796 @ rn6
Exon Skipping
Gene
ENSRNOG00000002461 | Nid1
Description
nidogen 1 [Source:RGD Symbol;Acc:3178]
Coordinates
chr17:90591014-90598956:-
Coord C1 exon
chr17:90598577-90598956
Coord A exon
chr17:90594191-90594340
Coord C2 exon
chr17:90591014-90591265
Length
150 bp
Sequences
Splice sites
3' ss Seq
CTTCTGTTTTCTCCAAACAGTAT
3' ss Score
9.64
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GAGCAGCAACGCTGGGCACCAGGGTGTGTGGGTGTTTGAGATTGGAAGTCCTGCTACTGCCAAGGGGGTGGTGCCTGCAGATGTGAACCTGGACGTGGATGATGATGGAGCAGACTATGAGGATGAAGATTATGACCTACAAACCTCTCATCTCGGCCTGGAGGATGTGGCCACCCAACCCTTCCCCTCCCATAGTCCAAGAAGGGGATACCCTGATCCACACAATGTACCTAGGACCCTAGCTCCTAGCTACGAGGCTACAGAGAGACCCCATGGAATCCCTACTGAGAGGACCAAATCTTTCCAGCTGCCAGTGGAGAGATTCCCCCAGAAGCACCCCCAGGTCATTGATGTGGATGAAGTAGAGGAAACAGGAGTTG
Seq A exon
TATTCAGCTACAACACAGGTTCCCAGCAGACGTGTGCCAACAATAGACACCAGTGCTCTGTGCATGCAGAGTGCAGAGACTACGCTACTGGCTTCTGCTGCAGGTGTGTGGCCAACTACACGGGCAATGGCAGGCAGTGCGTGGCAGAAG
Seq C2 exon
GCTCTCCACAGCGGGTCAACGGCAAGGTGAAGGGAAGGATCTTCGTGGGGAACAGCCAGGTCCCCGTGGTGTTTGAGAACACTGACCTACACTCCTATGTGGTGATGAACCACGGACGCTCTTACACAGCCATCAGTACCATCCCTGAAAGTGTCGGGTATTCCCTGCTTCCCCTGGCACCCATTGGAGGCATCATCGGATGGATGTTTGCAGTGGAGCAGGATGGGTTCAAGAATGGGTTTAGCATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002461-'9-5,'9-4,10-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.703 A=0.059 C2=0.035
Domain overlap (PFAM):
C1:
PF061199=NIDO=PD(18.3=13.3)
A:
PF129472=EGF_3=WD(100=70.6),PF074747=G2F=PU(0.5=2.0)
C2:
PF074747=G2F=FE(42.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCCCAGGTCATTGATGTG
R:
ATCCATCCGATGATGCCTCCA
Band lengths:
251-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]