GgaEX0017748 @ galGal3
Exon Skipping
Gene
ENSGALG00000011792 | F1NMD1_CHICK
Description
NA
Coordinates
chr4:53220925-53224786:-
Coord C1 exon
chr4:53224668-53224786
Coord A exon
chr4:53222848-53222915
Coord C2 exon
chr4:53220925-53221088
Length
68 bp
Sequences
Splice sites
3' ss Seq
ATACTCTTTTCCTTTAACAGATG
3' ss Score
10.91
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
TAGATCAGGACCGATATTACAATGCAACTTTCCTTATCACCAATGTCCCATATGACCTTCAGTATGGAAGGCAAACGACGGAGGAGTTCAGATACCTGAGCCAGGAGATTGAAACCATG
Seq A exon
ATGTATAGAGTATTTAAGGGGTCCTTTCTGAGCCGCAAGTACGTTAGATCCCATGTTGTCGCTCTAAG
Seq C2 exon
CCCAGATCCTGGTGGAGTGCTTGTATCTGTTGCTCTGGTATTTAAATTTCCCTCAGCTGACAGTAAGGCAACAAGCTGGAGTCATGTCAACAGTGTGTTACGTAGAAGGCTTGAAATAAGCTCAACGTTCTTGAATGTTGACCAGTCTACCATTAAACTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011792-'1-3,'1-2,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0243910=Adeno_E3_CR2=PD(17.1=15.0),PF0139015=SEA=PU(34.2=95.0)
A:
PF0139015=SEA=FE(19.8=100)
C2:
PF0139015=SEA=PD(44.1=87.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTATGGAAGGCAAACGACGG
R:
AGCCTTCTACGTAACACACTGT
Band lengths:
170-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]