HsaEX6084606 @ hg19
Exon Skipping
Gene
ENSG00000185873 | TMPRSS11B
Description
transmembrane protease, serine 11B [Source:HGNC Symbol;Acc:25398]
Coordinates
chr4:69100181-69101984:-
Coord C1 exon
chr4:69101869-69101984
Coord A exon
chr4:69101720-69101787
Coord C2 exon
chr4:69100181-69100341
Length
68 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTTTTCTCTTGTCAGATG
3' ss Score
10.74
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
AGAAGACTTACTATTATCAAGGTGATTTTCATATTTCTGGAGTCACATACAATGATAATTGTGAAAACGCAGCTTCACAAGCCAGCACAAATCTAAGCAAAGATATTGAGACTAAG
Seq A exon
ATGTTAAATGCATTTCAAAATTCCAGTATATATAAGGAATATGTCAAATCTGAGGTCATCAAACTTCT
Seq C2 exon
GCCTAATGCCAATGGTTCAAATGTGCAGTTACAGCTGAAATTCAAGTTTCCTCCAGCAGAAGGAGTTAGCATGAGGACTAAAATCAAGGCTAAATTACATCAGATGTTGAAAAACAACATGGCATCCTGGAATGCAGTTCCTGCTTCCATTAAACTCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185873-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139015=SEA=PU(36.2=97.4)
A:
PF0139015=SEA=FE(21.0=100)
C2:
PF0139015=SEA=PD(41.0=78.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAAGCCAGCACAAATCTAAGC
R:
CTGCATTCCAGGATGCCATGT
Band lengths:
178-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)