MmuEX6018481 @ mm10
Exon Skipping
Gene
ENSMUSG00000035861 | Tmprss11b
Description
transmembrane protease, serine 11B [Source:MGI Symbol;Acc:MGI:2442893]
Coordinates
chr5:86664964-86667603:-
Coord C1 exon
chr5:86667485-86667603
Coord A exon
chr5:86667324-86667391
Coord C2 exon
chr5:86664964-86665124
Length
68 bp
Sequences
Splice sites
3' ss Seq
TATGTTCTCTCTCTTAACAGATG
3' ss Score
13.25
5' ss Seq
GGTGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
AAAACAAGATCTACTACTATCAAGGTGGTTTTAAAGTGCTGGATATTCCATATGACAGAAATTATGAAAGGGAGACATCACTAGAAAGTAACTACCTCAGTAAAATCCTTGAGAATAAA
Seq A exon
ATGGTTGAAGCCTTTCAGAATTCTAACATTTACAAACAATATATCAACTCTCAGGTCATCACATTGGT
Seq C2 exon
TCCTGATAACAACAGCGTGACAGCACATATATGGCTGGTGTTTAAGGATCCCTGGTCTAACAAGGAAAACCTAAGAAGGAGAATTGAAAGCATCTTACGTCAGATGCTGGAGAACAACCCAGAATCCCTGACTACAGATCCTGGGTCTCTGAAGCTCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035861-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.109
Domain overlap (PFAM):
C1:
PF0139015=SEA=PU(34.5=95.0)
A:
PF0139015=SEA=FE(20.0=100)
C2:
PF0139015=SEA=PD(43.6=87.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGGTGGTTTTAAAGTGCTGGA
R:
TTCCTTGTTAGACCAGGGATCCT
Band lengths:
167-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types