GgaEX0017748 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr4:51125386-51129240:-
Coord C1 exon
chr4:51129125-51129240
Coord A exon
chr4:51127305-51127372
Coord C2 exon
chr4:51125386-51125549
Length
68 bp
Sequences
Splice sites
3' ss Seq
ATACTCTTTTCCTTTAACAGATG
3' ss Score
10.91
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
ATCAGGACCGATATTACAATGCAACTTTCCTTATCACCAATGTCCCATATGACCTTCAGTATGGAAGGCAAACGACGGAGGAGTTCAGATACCTGAGCCAGGAGATTGAAACCATG
Seq A exon
ATGTATAGAGTATTTAAGGGGTCCTTTCTGAGCCGCAAGTACGTTAGATCCCATGTTGTCGCTCTAAG
Seq C2 exon
CCCAGATCCTGGTGGAGTGCTTGTATCTGTTGCTCTGGTATTTAAATTTCCCTCAGCTGACAGTAAGGCAACAAGCTGGAGTCATGTCAACAGTGTGTTACGTAGAAGGCTTGAAATAAGCTCAACGTTCTTGAATGTTGACCAGTCTACCATTAAACTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011792_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0243910=Adeno_E3_CR2=PD(17.1=15.4),PF0139015=SEA=PU(33.6=94.9)
A:
PF0139015=SEA=FE(20.0=100)
C2:
PF0139015=SEA=PD(44.5=87.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTATGGAAGGCAAACGACGG
R:
AGCCTTCTACGTAACACACTGT
Band lengths:
170-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]