BtaEX6031511 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004412 | TMPRSS11F
Description
transmembrane protease, serine 11F [Source:HGNC Symbol;Acc:HGNC:29994]
Coordinates
chr6:85494151-85509602:-
Coord C1 exon
chr6:85509484-85509602
Coord A exon
chr6:85496524-85496588
Coord C2 exon
chr6:85494151-85494314
Length
65 bp
Sequences
Splice sites
3' ss Seq
TTAAATTTTTTTCTATTCAGATG
3' ss Score
9.34
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
ATGATAAGTCATTCTACTATCTTGCCTCTTTTAAAGCTACAAATATAAAATATAGAGAATGTTATGGAATAAGAACCTCAAAACAATTTATAGAAAGGAGTCATCAGATTGAGAGAATG
Seq A exon
ATGTCTAGGATATTTCAACATTCTGGAGAGGGTCGGTTTATCAAATCTCATGTTATCAAATTAAG
Seq C2 exon
TCCAGATCAAAATGGTATGAACATTCATATGGTGCTTGTGTTTCGATTCCCATCTACTGATAGTGCTGAGCAAGTCAGGAAAAAAATTGAAAGGATTCTATATCAAAGTCTGAAGAGAGAACCGATGCCTTTGACTATATACAAACCATCATTTACACTCACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004412-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139015=SEA=PU(34.9=95.0)
A:
PF0139015=SEA=FE(19.3=100)
C2:
PF0139015=SEA=PD(44.0=85.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGCCTCTTTTAAAGCTACAAA
R:
TTTCCTGACTTGCTCAGCACT
Band lengths:
182-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]