MmuEX6018473 @ mm9
Exon Skipping
Gene
ENSMUSG00000048764 | Tmprss11f
Description
transmembrane protease, serine 11f [Source:MGI Symbol;Acc:MGI:2442348]
Coordinates
chr5:86967015-86973922:-
Coord C1 exon
chr5:86973804-86973922
Coord A exon
chr5:86968720-86968787
Coord C2 exon
chr5:86967015-86967178
Length
68 bp
Sequences
Splice sites
3' ss Seq
TTTTAATTTTTTTGTATTAGATG
3' ss Score
7.7
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
ATGACAAGTCATTTTATTACCTCGCCTCTTTTCAAGTCACAAGCATCAAATACAGAGAAAATTATGGAATCAGGTCATCAAGGGAGTTTATAGAAAGAAGTCATCAGATCGAGAGAATG
Seq A exon
ATGTCCAGGATATTCCGACGTTCTTCTGGAGTGGGTAGATTTATCAAGTCCCATGTTATCAAGATAAG
Seq C2 exon
TCCAGATGAACAAGGAGTGAACATTCTTATAGTGCTCATGTTTCGATACCCATCTACTGATAGTGCCGAGCGAATCAAGAAAAGAATTGAAAGGACTTTTTATCAAAGTCTGAAGATCAAACAGTTGCCTTTGACTATTAGTATGCCATCATTCAGCCTCACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048764-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139015=SEA=PU(34.9=95.0)
A:
PF0139015=SEA=FE(20.2=100)
C2:
PF0139015=SEA=PD(43.1=83.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCGCCTCTTTTCAAGTCAC
R:
TTTCTTGATTCGCTCGGCACT
Band lengths:
183-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: