HsaEX6084597 @ hg19
Exon Skipping
Gene
ENSG00000198092 | TMPRSS11F
Description
transmembrane protease, serine 11F [Source:HGNC Symbol;Acc:29994]
Coordinates
chr4:68938041-68956359:-
Coord C1 exon
chr4:68956241-68956359
Coord A exon
chr4:68939660-68939727
Coord C2 exon
chr4:68938041-68938204
Length
68 bp
Sequences
Splice sites
3' ss Seq
ACTTATTTTTTAAAAATCAGATG
3' ss Score
4.87
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
ATGATAAGTCTTTCTATTACCTTGCCTCTTTTAAAGTCACAAATATCAAATATAAAGAAAATTATGGCATAAGATCTTCAAGAGAGTTTATAGAAAGGAGTCATCAGATTGAAAGAATG
Seq A exon
ATGTCTAGGATATTTCGACATTCTTCTGTAGGCGGTCGATTTATCAAATCTCATGTTATCAAATTAAG
Seq C2 exon
TCCAGATGAACAAGGTGTGGATATTCTTATAGTGCTCATATTTCGATACCCATCTACTGATAGTGCTGAACAAATCAAGAAAAAAATTGAAAAGGCTTTATATCAAAGTTTGAAGACCAAACAATTGTCTTTGACCATAAACAAACCATCATTTAGACTCACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198092-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139015=SEA=PU(34.2=95.0)
A:
PF0139015=SEA=FE(19.8=100)
C2:
PF0139015=SEA=PD(44.1=87.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTGCCTCTTTTAAAGTCACA
R:
TCAGCACTATCAGTAGATGGGT
Band lengths:
170-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)