MmuEX6018473 @ mm10
Exon Skipping
Gene
ENSMUSG00000048764 | Tmprss11f
Description
transmembrane protease, serine 11f [Source:MGI Symbol;Acc:MGI:2442348]
Coordinates
chr5:86537990-86544897:-
Coord C1 exon
chr5:86544779-86544897
Coord A exon
chr5:86539695-86539762
Coord C2 exon
chr5:86537990-86538153
Length
68 bp
Sequences
Splice sites
3' ss Seq
TTTTAATTTTTTTGTATTAGATG
3' ss Score
7.7
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
ATGACAAGTCATTTTATTACCTCGCCTCTTTTCAAGTCACAAGCATCAAATACAGAGAAAATTATGGAATCAGGTCATCAAGGGAGTTTATAGAAAGAAGTCATCAGATCGAGAGAATG
Seq A exon
ATGTCCAGGATATTCCGACGTTCTTCTGGAGTGGGTAGATTTATCAAGTCCCATGTTATCAAGATAAG
Seq C2 exon
TCCAGATGAACAAGGAGTGAACATTCTTATAGTGCTCATGTTTCGATACCCATCTACTGATAGTGCCGAGCGAATCAAGAAAAGAATTGAAAGGACTTTTTATCAAAGTCTGAAGATCAAACAGTTGCCTTTGACTATTAGTATGCCATCATTCAGCCTCACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048764-'6-6,'6-5,8-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139015=SEA=PU(34.9=95.0)
A:
PF0139015=SEA=FE(20.2=100)
C2:
PF0139015=SEA=PD(43.1=83.9)
Main Skipping Isoform:
ENSMUST00000116553fB18452
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCGCCTCTTTTCAAGTCAC
R:
TTTCTTGATTCGCTCGGCACT
Band lengths:
183-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types