RnoEX6042052 @ rn6
Exon Skipping
Gene
ENSRNOG00000002005 | Tmprss11f
Description
transmembrane serine protease 11F [Source:RGD Symbol;Acc:1560675]
Coordinates
chr14:23996027-24004107:-
Coord C1 exon
chr14:24003989-24004107
Coord A exon
chr14:23997717-23997784
Coord C2 exon
chr14:23996027-23996190
Length
68 bp
Sequences
Splice sites
3' ss Seq
TTTTAATTCTTTTGTATTAGATG
3' ss Score
7.03
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
ATGACAAGTCGTTCTATTACCTTGCCTCTTTTCAAGTCACAAACATCAAATACAAAGAAAATTACGGAATCAGATCATCAAGAGAGTTTATAGAAAGAAGTCATCAGATTGAGAGAATG
Seq A exon
ATGTCTAGGATATTTCGACGTTCTTCTGGAGTGGGTCGGTTTATCAAGTCCCATGTTATCAAGATAAG
Seq C2 exon
TCCAGATGAACAAGGCGTGAACATTCTTATAGTGCTCATGTTTCGATATCCATCTACTGACAGTGCCGAGCACATCAAGAAGAAAATTGAAAGGACTTTATATCAGAGTCTGAAGATCAAACAGTTCCCTTTGACTATTAATAAGCCATCGTTTAGCCTCACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002005-'7-6,'7-5,8-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139015=SEA=PU(34.5=95.0)
A:
PF0139015=SEA=FE(20.0=100)
C2:
PF0139015=SEA=PD(43.6=85.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTGCCTCTTTTCAAGTCACA
R:
GCTCGGCACTGTCAGTAGATG
Band lengths:
172-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]