RnoEX6042060 @ rn6
Exon Skipping
Gene
ENSRNOG00000002002 | Tmprss11b
Description
transmembrane serine protease 11B [Source:RGD Symbol;Acc:1303278]
Coordinates
chr14:24108124-24116519:-
Coord C1 exon
chr14:24116401-24116519
Coord A exon
chr14:24116245-24116312
Coord C2 exon
chr14:24108124-24108284
Length
68 bp
Sequences
Splice sites
3' ss Seq
ACTTTGCTTTCTCTTAACAGATG
3' ss Score
11.98
5' ss Seq
GGTGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
AAAACAAGATCTACTACTATCAAGGTAGTTTTAAAGTTCTGAATATTCCATATGACAGAAATTATGAAAGAGAGACATCACTAGAAAGTAACTACCTCAGTAAAATCCTCGAGATTAAA
Seq A exon
ATGGTTGATGCCTTTGAGAGTTCTAACATTTATAAACAATATATCAACTCTCAGATCATCACATTGGT
Seq C2 exon
TCCTGAAAACAACAGCGTGACAGCACATATATGGCTGGTGTTTAAGGACCCCTGGTCAAACAAGGAAAACCTAAGAAGAAGAATTGAAAGCATCTTACATCAGATGCTGGAGAACAACTCGGGATCCTTGACTACAGATCCTGGGTCTCTGAAGCTCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002002-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.018
Domain overlap (PFAM):
C1:
PF0139015=SEA=PU(34.5=95.0)
A:
PF0139015=SEA=FE(20.0=100)
C2:
PF0139015=SEA=PD(43.6=87.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACCTCAGTAAAATCCTCGAGA
R:
TCTGTAGTCAAGGATCCCGAGT
Band lengths:
167-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]