GgaEX0018068 @ galGal3
Exon Skipping
Gene
ENSGALG00000012044 | Q90716_CHICK
Description
NA
Coordinates
chr4:58380199-58383041:-
Coord C1 exon
chr4:58382943-58383041
Coord A exon
chr4:58382670-58382768
Coord C2 exon
chr4:58380199-58380297
Length
99 bp
Sequences
Splice sites
3' ss Seq
GCTCTTGCTTTGTTTCGCAGTCG
3' ss Score
7.82
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
AATGGTTTTACTCCACTGCACATTGCCTGCAAGAAAAATCGCATCAAAGTCATGGAACTCCTGGTGAAATATGGGGCTTCAATCCAGGCTATAACAGAG
Seq A exon
TCGGGCCTCACACCAATACATGTGGCTGCATTTATGGGCCACTTGAACATAGTCCTCCTTCTGCTGCAGAATGGAGCCTCTCCCGATGTCACTAACATT
Seq C2 exon
CGTGGAGAAACTGCACTGCACATGGCAGCACGTGCCGGACAGGTGGAAGTAGTTCGTTGTCTCCTGAGAAATGGGGCTCTAGTTGATGCCCGAGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012044-'18-19,'18-18,19-19
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(33.3=93.9),PF127962=Ank_2=PU(4.3=9.1)
A:
PF127962=Ank_2=FE(46.4=100)
C2:
PF127962=Ank_2=PD(44.9=93.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTCCACTGCACATTGCCTG
R:
AGCCCCATTTCTCAGGAGACA
Band lengths:
169-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]