GgaEX0018069 @ galGal3
Exon Skipping
Gene
ENSGALG00000012044 | Q90716_CHICK
Description
NA
Coordinates
chr4:58382670-58386083:-
Coord C1 exon
chr4:58385886-58386083
Coord A exon
chr4:58382943-58383041
Coord C2 exon
chr4:58382670-58382768
Length
99 bp
Sequences
Splice sites
3' ss Seq
CATGACTGTCTTTTGCACAGAAT
3' ss Score
6.96
5' ss Seq
GAGGTAGAA
5' ss Score
4.54
Exon sequences
Seq C1 exon
AATGGGCTCTCCCCACTTCACATGGCGGCCCAGGGGGACCATGTGGAATGTGTCAAACATCTCCTGCAGCACAAAGCTCCTGTGGATGATGTCACGCTGGATTACCTGACTGCCCTCCATGTGGCTGCGCACTGCGGCCACTATCGTGTCACCAAGCTCCTCCTGGACAAGAGAGCAAATCCCAATGCTCGTGCCCTG
Seq A exon
AATGGTTTTACTCCACTGCACATTGCCTGCAAGAAAAATCGCATCAAAGTCATGGAACTCCTGGTGAAATATGGGGCTTCAATCCAGGCTATAACAGAG
Seq C2 exon
TCGGGCCTCACACCAATACATGTGGCTGCATTTATGGGCCACTTGAACATAGTCCTCCTTCTGCTGCAGAATGGAGCCTCTCCCGATGTCACTAACATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012044-'17-18,'17-17,18-18
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(33.3=47.0),PF136371=Ank_4=PU(57.4=47.0)
A:
PF127962=Ank_2=PD(33.3=93.9),PF127962=Ank_2=PU(4.3=9.1)
C2:
PF127962=Ank_2=FE(46.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACCTGACTGCCCTCCATGT
R:
TTCTGCAGCAGAAGGAGGACT
Band lengths:
168-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]