DreEX6007818 @ danRer10
Exon Skipping
Gene
ENSDARG00000043313 | ank2b
Description
ankyrin 2b, neuronal [Source:ZFIN;Acc:ZDB-GENE-041010-165]
Coordinates
chr7:57666240-57670509:-
Coord C1 exon
chr7:57670312-57670509
Coord A exon
chr7:57670122-57670220
Coord C2 exon
chr7:57666240-57666338
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTGCTGGTTGTTTCTCTCAGAAC
3' ss Score
7.81
5' ss Seq
GAGGTAATA
5' ss Score
7.96
Exon sequences
Seq C1 exon
AATGGTTTATCACCGCTCCACATGGCAGCGCAGGGTGACCATGTGGAGTGTGTCAAGCACCTGCTGCAGCACAAGGCGCCCGTTGATGATGTCACACTGGACTACCTGACAGCCCTCCACGTCGCTGCCCACTGTGGTCACTACAGAGTAACCAAACTTCTACTGGACAAGAGAGCCAATCCCAATGCTCGAGCACTG
Seq A exon
AACGGTTTCACTCCTCTGCACATCGCCTGTAAGAAAAACAGAGTAAAAGTGATGGAGCTGCTGATTAAATATGGAGCCTTCATTCAAGCTATCACTGAG
Seq C2 exon
TCTGGTCTCACACCAATCCACGTGGCAGCCTTCATGGGTCACCTCAACATTGTTCTTCTACTGCTGCAGAATGGAGCTTCTCCTGATGTCAGCAACATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000043313-'20-17,'20-16,21-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(33.3=47.0),PF136371=Ank_4=PU(57.4=47.0)
A:
PF127962=Ank_2=PD(32.6=90.9),PF127962=Ank_2=PU(7.0=15.2)
C2:
PF127962=Ank_2=PD(35.2=93.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCGTTGATGATGTCACACT
R:
GTTGAGGTGACCCATGAAGGC
Band lengths:
169-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]