MmuEX0004903 @ mm10
Exon Skipping
Gene
ENSMUSG00000032826 | Ank2
Description
ankyrin 2, brain [Source:MGI Symbol;Acc:MGI:88025]
Coordinates
chr3:127023292-127032313:-
Coord C1 exon
chr3:127032116-127032313
Coord A exon
chr3:127029475-127029573
Coord C2 exon
chr3:127023292-127023390
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTTGATTGTCTTTTGCACAGAAT
3' ss Score
5.48
5' ss Seq
GAGGTAGAA
5' ss Score
4.54
Exon sequences
Seq C1 exon
AATGGGCTGTCCCCGCTTCACATGGCTGCGCAGGGGGACCACGTGGAATGTGTGAAGCACCTGCTCCAATACAAGGCGCCTGTCGATGACGTCACCCTGGATTACCTGACGGCTCTTCATGTTGCTGCACACTGTGGGCACTACCGTGTAACCAAACTCCTGCTGGACAAGAGAGCCAACCCGAACGCAAGAGCCCTG
Seq A exon
AATGGTTTTACTCCACTGCACATTGCCTGCAAGAAAAACCGCATCAAAGTCATGGAACTGCTGGTGAAATATGGGGCTTCAATCCAAGCTATAACAGAG
Seq C2 exon
CGTGGTGAGACAGCTCTTCACATGGCGGCCCGGGCTGGGCAGGTGGAAGTGGTCCGATGTCTTCTGAGGAATGGTGCTCTTGTGGATGCCAGAGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032826_MULTIEX5-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(33.3=47.0),PF127962=Ank_2=PU(29.0=40.9)
A:
PF127962=Ank_2=PD(33.3=93.9),PF127962=Ank_2=PU(5.7=12.1)
C2:
PF127962=Ank_2=PU(23.3=60.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACGGCTCTTCATGTTGCT
R:
GGCATCCACAAGAGCACCATT
Band lengths:
183-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types