GgaEX0018069 @ galGal4
Exon Skipping
Gene
ENSGALG00000012044 | chAnk2
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NG08]
Coordinates
chr4:56425023-56430907:-
Coord C1 exon
chr4:56430710-56430907
Coord A exon
chr4:56427767-56427865
Coord C2 exon
chr4:56425023-56425121
Length
99 bp
Sequences
Splice sites
3' ss Seq
CATGACTGTCTTTTGCACAGAAT
3' ss Score
6.96
5' ss Seq
GAGGTAGAA
5' ss Score
4.54
Exon sequences
Seq C1 exon
AATGGGCTCTCCCCACTTCACATGGCGGCCCAGGGGGACCATGTGGAATGTGTCAAACATCTCCTGCAGCACAAAGCTCCTGTGGATGATGTCACGCTGGATTACCTGACTGCCCTCCATGTGGCTGCGCACTGCGGCCACTATCGTGTCACCAAGCTCCTCCTGGACAAGAGAGCAAATCCCAATGCTCGTGCCCTG
Seq A exon
AATGGTTTTACTCCACTGCACATTGCCTGCAAGAAAAATCGCATCAAAGTCATGGAACTCCTGGTGAAATATGGGGCTTCAATCCAGGCTATAACAGAG
Seq C2 exon
CGTGGAGAAACTGCACTGCACATGGCAGCACGTGCCGGACAGGTGGAAGTAGTTCGTTGTCTCCTGAGAAATGGGGCTCTAGTTGATGCCCGAGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012044_MULTIEX3-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(33.7=47.0),PF136371=Ank_4=PU(57.4=47.0)
A:
PF127962=Ank_2=PD(33.3=93.9),PF127962=Ank_2=PU(4.3=9.1)
C2:
PF127962=Ank_2=PD(44.9=93.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACCTGACTGCCCTCCATGT
R:
AGCCCCATTTCTCAGGAGACA
Band lengths:
175-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]