GgaEX0018748 @ galGal4
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
low density lipoprotein receptor-related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
Coordinates
chr7:31537967-31541940:-
Coord C1 exon
chr7:31541751-31541940
Coord A exon
chr7:31539938-31540060
Coord C2 exon
chr7:31537967-31538107
Length
123 bp
Sequences
Splice sites
3' ss Seq
GTTTTATGTTGCTTTTACAGGTA
3' ss Score
11.4
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
GTAATCTACAGCGGAAAAGATTTGAATCATCCTTTTGGATTATCACATCACGGAAATCATATTTACTGGACAGACTATATGAATGGATCTATTTTCCAGCTGGATCTGATCACAAGGAATGTGACACTATTAAGAAGTGAGAGACCACCTTTGTTTGGGCTTCAGATATATGACCCGCGTAAACAGCAAG
Seq A exon
GTAACAATGCATGTCGCGTTAACAATGGAGGCTGCAGTACTCTCTGTTTAGCCATTCCTGGAGGCAGAGTTTGTGCCTGTGCTGATAATCAGTTTTTGGAGGAAAACAGTACAACCTGCATGA
Seq C2 exon
TTAAACATGGAGAAATGCCACCACAGTTGTGCAAAGCTGAACAGTTTCAGTGCAACAATAAGCGTTGTATCCATGATCGCTGGCGCTGTGATGGAGATGATGACTGTTTGGATGGCAGTGATGAGCACGCCGACATTTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407-'24-41,'24-40,25-41
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PD(34.2=20.3)
A:
PF146701=FXa_inhibition=WD(100=85.7)
C2:
PF0005713=Ldl_recept_a=WD(100=81.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATCTATTTTCCAGCTGGATCTG
R:
CAAATGTCGGCGTGCTCATCA
Band lengths:
246-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]