GgaEX0018969 @ galGal3
Exon Skipping
Gene
ENSGALG00000012555 | CCDC148
Description
NA
Coordinates
chr7:37974134-37978593:-
Coord C1 exon
chr7:37978498-37978593
Coord A exon
chr7:37978229-37978410
Coord C2 exon
chr7:37974134-37974272
Length
182 bp
Sequences
Splice sites
3' ss Seq
AGTAGCATTTTTCATCACAGGCC
3' ss Score
4.95
5' ss Seq
TAGGTAATG
5' ss Score
7.57
Exon sequences
Seq C1 exon
ATTGAATCTGTGAAGAAAGAATGGAAAACAAATTTGGAATTTCTTAACCTTGAAAGTCTGGCTTTGGAAAGAGAGCTTCAAGACTACAAAATAGAA
Seq A exon
GCCATAGTGAATGGTTTTGAAGAGAAAAATGGACTTTTCCATGAAGTTCCTTCAGCTCTACTGTCTTTGGAGTTCCCTTACCCAGACTTGAGGAGCTTTGTTATTAATGAATACCGTAAGCTTGCAAATGAATACTGGTCTAAGCTGCAAGAGATTGATCAACAGCTAAACGTCATATATAG
Seq C2 exon
GAACACTGACTGGAAGGCAGAAGATCAATGGATTTTTCAGACAGTTGTCAACCAGTATCCGAGTGATCTTCAGCGAAGAAGGACTTTGTACCTTGATATGTTGCAGAGATGTCTTCCTCACAAGTCTAGGCACGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012555_CASSETTE2
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAATCTGTGAAGAAAGAATGGAA
R:
CAGCTCGTGCCTAGACTTGTG
Band lengths:
234-416
Functional annotations
There are 0 annotated functions for this event