RnoEX6016930 @ rn6
Exon Skipping
Gene
ENSRNOG00000057740 | Ccdc148
Description
coiled-coil domain containing 148 [Source:RGD Symbol;Acc:1561169]
Coordinates
chr3:45088857-45111195:-
Coord C1 exon
chr3:45111100-45111195
Coord A exon
chr3:45110841-45111022
Coord C2 exon
chr3:45088857-45088995
Length
182 bp
Sequences
Splice sites
3' ss Seq
TAAAAGAACTATCTCTTTAGTTA
3' ss Score
2.65
5' ss Seq
CAGGTGATG
5' ss Score
5.99
Exon sequences
Seq C1 exon
GTTGACTTTGTCAAGAAGCAATCCAAGGCTGCCTTTGAAAGACTTCATCAGGAGCAACAGCACTTAGAAGAGGAACTTTCGGACTGGAGTGTGGAG
Seq A exon
TTACTAGGTCACTCTTCAGAGGAAAAGTCTAACCTGCTCAGCGGACAACCTACGGAGTTGGAAACGCTGGACTGCCCATACCCTGATCTGAAATCGTCAATCCTCAACGAGTTCAGTAACTTTACAGAGAAATATCAAGAGGAACTTGAAGATTTTGATCTGCAATTAGAAGACATACGCAG
Seq C2 exon
TAACTTCCAACTAAGTGAGGAAGAGCAGTGGATTTACCAGGCTGTCTTAGACCAGTATCCCGGAAATCTCCTTGGCAGAAGGGCTCTGTACTTGGACATGTTGCAAAGATATTTTCCTCACAAGTCCAGGCATCATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057740-'14-20,'14-17,15-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=0.092 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGTCAAGAAGCAATCCAAGGC
R:
TGATGCCTGGACTTGTGAGGA
Band lengths:
226-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]