GgaEX0018969 @ galGal4
Exon Skipping
Gene
ENSGALG00000012555 | CCDC148
Description
coiled-coil domain containing 148 [Source:HGNC Symbol;Acc:HGNC:25191]
Coordinates
chr7:35839022-35843481:-
Coord C1 exon
chr7:35843386-35843481
Coord A exon
chr7:35843117-35843298
Coord C2 exon
chr7:35839022-35839160
Length
182 bp
Sequences
Splice sites
3' ss Seq
AGTAGCATTTTTCATCACAGGCC
3' ss Score
4.95
5' ss Seq
TAGGTAATG
5' ss Score
7.57
Exon sequences
Seq C1 exon
ATTGAATCTGTGAAGAAAGAATGGAAAACAAATTTGGAATTTCTTAACCTTGAAAGTCTGGCTTTGGAAAGAGAGCTTCAAGACTACAAAATAGAA
Seq A exon
GCCATAGTGAATGGTTTTGAAGAGAAAAATGGACTTTTCCATGAAGTTCCTTCAGCTCTACTGTCTTTGGAGTTCCCTTACCCAGACTTGAGGAGCTTTGTTATTAATGAATACCGTAAGCTTGCAAATGAATACTGGTCTAAGCTGCAAGAGATTGATCAACAGCTAAACGTCATATATAG
Seq C2 exon
GAACACTGACTGGAAGGCAGAAGATCAATGGATTTTTCAGACAGTTGTCAACCAGTATCCGAGTGATCTTCAGCGAAGAAGGACTTTGTACCTTGATATGTTGCAGAGATGTCTTCCTCACAAGTCTAGGCACGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012555_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAATCTGTGAAGAAAGAATGGAA
R:
CAGCTCGTGCCTAGACTTGTG
Band lengths:
234-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]