GgaEX0018994 @ galGal3
Exon Skipping
Gene
ENSGALG00000012570 | TANC1
Description
NA
Coordinates
chr7:38134846-38137810:+
Coord C1 exon
chr7:38134846-38134947
Coord A exon
chr7:38135538-38135585
Coord C2 exon
chr7:38137689-38137810
Length
48 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTTTTAAGTTT
3' ss Score
9.99
5' ss Seq
TGAGTAATT
5' ss Score
0.85
Exon sequences
Seq C1 exon
GTCCGATCAGGAAGGCCAAGTATGTGGAAAGTCCTAGAGTGCCAGGTGAGGCAATTCTACTGCTGAGAAAACAATCAGGGCAAGAAGAACCCATTCAAAATG
Seq A exon
TTTAAGGACCTCATTAAATTAACTGTGTGATCATCAGATTCCAGATGA
Seq C2 exon
CAAAGCCTGATAAAGACTCAAGCTGTTCTCCTGCAGCACAAGAATTGATGACGAGATTGGGTTTTTTACTAGGAGAAGGGATACCAACATCTGCTCATATAGAAGAAAAAAATGAATCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012570-'3-5,'3-4,4-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.843 A=1.000 C2=0.732
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGAAGGCCAAGTATGTGGA
R:
TCTTGTGCTGCAGGAGAACAG
Band lengths:
139-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]