GgaEX0018995 @ galGal3
Exon Skipping
Gene
ENSGALG00000012570 | TANC1
Description
NA
Coordinates
chr7:38134846-38138899:+
Coord C1 exon
chr7:38134846-38134947
Coord A exon
chr7:38137689-38137810
Coord C2 exon
chr7:38138710-38138899
Length
122 bp
Sequences
Splice sites
3' ss Seq
CCCCACCCTTCTCTCTAAAGCAA
3' ss Score
7.62
5' ss Seq
ATGGTAGGA
5' ss Score
6.66
Exon sequences
Seq C1 exon
GTCCGATCAGGAAGGCCAAGTATGTGGAAAGTCCTAGAGTGCCAGGTGAGGCAATTCTACTGCTGAGAAAACAATCAGGGCAAGAAGAACCCATTCAAAATG
Seq A exon
CAAAGCCTGATAAAGACTCAAGCTGTTCTCCTGCAGCACAAGAATTGATGACGAGATTGGGTTTTTTACTAGGAGAAGGGATACCAACATCTGCTCATATAGAAGAAAAAAATGAATCCATG
Seq C2 exon
TGTACTATAGCCAGTCAAGGAGTCAGTCCATGTTCTACCCTCACAAGCAGCACTACATCTCCAAGCACTGATAGCCCATGCTCAACTCTTAATAGCTGTACTGGCAAAGCAGCAGCCAACAAAGGTAGTCCCTGTGAAACCATGAGAAGCCCTAGCTCCACCCTGGAGAGCAAGGACAGTGGAATAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012570_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.843 A=0.732 C2=0.797
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCTAGAGTGCCAGGTGAG
R:
TTCCACTGTCCTTGCTCTCCA
Band lengths:
257-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]