GgaEX0018995 @ galGal4
Exon Skipping
Gene
ENSGALG00000012570 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr7:35998510-36002563:+
Coord C1 exon
chr7:35998510-35998611
Coord A exon
chr7:36001353-36001474
Coord C2 exon
chr7:36002374-36002563
Length
122 bp
Sequences
Splice sites
3' ss Seq
CCCCACCCTTCTCTCTAAAGCAA
3' ss Score
7.62
5' ss Seq
ATGGTAGGA
5' ss Score
6.66
Exon sequences
Seq C1 exon
GTCCGATCAGGAAGGCCAAGTATGTGGAAAGTCCTAGAGTGCCAGGTGAGGCAATTCTACTGCTGAGAAAACAATCAGGGCAAGAAGAACCCATTCAAAATG
Seq A exon
CAAAGCCTGATAAAGACTCAAGCTGTTCTCCTGCAGCACAAGAATTGATGACGAGATTGGGTTTTTTACTAGGAGAAGGGATACCAACATCTGCTCATATAGAAGAAAAAAATGAATCCATG
Seq C2 exon
TGTACTATAGCCAGTCAAGGAGTCAGTCCATGTTCTACCCTCACAAGCAGCACTACATCTCCAAGCACTGATAGCCCATGCTCAACTCTTAATAGCTGTACTGGCAAAGCAGCAGCCAACAAAGGTAGTCCCTGTGAAACCATGAGAAGCCCTAGCTCCACCCTGGAGAGCAAGGACAGTGGAATAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012570_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.843 A=0.732 C2=0.797
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000020527fB2269
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCTAGAGTGCCAGGTGAG
R:
TTCCACTGTCCTTGCTCTCCA
Band lengths:
257-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]