BtaEX0035571 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004177 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr2:37315158-37332516:-
Coord C1 exon
chr2:37332412-37332516
Coord A exon
chr2:37316368-37316498
Coord C2 exon
chr2:37315158-37315344
Length
131 bp
Sequences
Splice sites
3' ss Seq
GTTTTCTTTCTTTGTTCCAGAAG
3' ss Score
10.3
5' ss Seq
ATGGTAATG
5' ss Score
5.46
Exon sequences
Seq C1 exon
GTCCTGTCAGGAAGCCCAAGTATGTGGAAAGCCCCAGAGTGCCTGGAGATGCAGTCATAATCCCGTTCCGAGACGTGCCCAAGCCAGCAGAGCCCAGTGAGAATG
Seq A exon
AAGCAAAGGCCGATAATGAACCGAGCTGTTCGCCGGCAGCTCAAGAACTGTTGACAAGACTGGGATTTTTACTGGGAGAAGGGATCCCAAGTGCCACACACATAACCATTGAAGAAAAAAATGAAACCATG
Seq C2 exon
TGCACAGCTCTGAGCCAAGGCATCAGCCCTTGCTCCACTCTTACGAGCAGCACCGCCTCTCCTAGCACCGATAGCCCCTGCTCAACCTTGAATAGCTGTGTCAGCAAGACGGCAGCCAACAAAAGTCCCTGTGAGACCATTAGCAGCCCTAGCTCCACCCTGGAAAGCAAGGACAGTGGAATTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004177-'15-18,'15-16,16-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.889 A=0.591 C2=0.619
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCAAGTATGTGGAAAGCC
R:
AGGGCTGCTAATGGTCTCACA
Band lengths:
243-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development