HsaEX0063551 @ hg38
Exon Skipping
Gene
ENSG00000115183 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr2:159136194-159163546:+
Coord C1 exon
chr2:159136194-159136298
Coord A exon
chr2:159149142-159149272
Coord C2 exon
chr2:159163283-159163546
Length
131 bp
Sequences
Splice sites
3' ss Seq
GTTTTCTTTCTTTGTTCCAGAAG
3' ss Score
10.3
5' ss Seq
ATGGTAATG
5' ss Score
5.46
Exon sequences
Seq C1 exon
GTCCCGTCAGGAAGCCCAAGTATGTGGAAAGCCCCAGAGTGCCTGGAGATGCAGTTATAATGCCATTCAGAGAAGTAGCCAAGCCAACAGAGCCTGATGAGCATG
Seq A exon
AAGCAAAGGCCGATAATGAACCGAGCTGTTCGCCGGCAGCTCAAGAACTGTTGACAAGGCTGGGATTTTTACTGGGAGAAGGGATCCCAAGTGCCACACACATAACCATTGAAGACAAAAATGAAACCATG
Seq C2 exon
CCACAATTACAAGTTCATCCGAAAATGATGACCGGAGTGGCTCCAGTTTGGAATGGAATAAAGATGGAAACCTAAGATTAGGGGTTCAGAAGGGAGTGCTTCATGACCGCAGGGCAGATAACTGCTCCCCAGTGGCAGAAGAGGAGACCACCGGGTCAGCAGAGAGCACGCTGCCCAAAGCAGAATCCTCAGCTGGAGATGGTCCAGTCCCTTATTCTCAGGGCTCCAGCTCACTAATAATGCCACGGCCCAACTCAGTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115183_MULTIEX1-12/15=10-14
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.942 A=0.545 C2=0.966
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000263635fB27534
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAGTATGTGGAAAGCCCC
R:
GTGGTCTCCTCTTCTGCCACT
Band lengths:
242-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development