HsaEX1039948 @ hg38
Exon Skipping
Gene
ENSG00000115183 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr2:159136194-159149272:+
Coord C1 exon
chr2:159136194-159136298
Coord A exon
chr2:159141914-159142051
Coord C2 exon
chr2:159149142-159149272
Length
138 bp
Sequences
Splice sites
3' ss Seq
TGCCACTTTATACCTTGCAGGAC
3' ss Score
8.91
5' ss Seq
TAGGTATGT
5' ss Score
7.76
Exon sequences
Seq C1 exon
GTCCCGTCAGGAAGCCCAAGTATGTGGAAAGCCCCAGAGTGCCTGGAGATGCAGTTATAATGCCATTCAGAGAAGTAGCCAAGCCAACAGAGCCTGATGAGCATG
Seq A exon
GACAGAGTGCTTGCAAGGCCGTAGATCTACAGGAAAATCAAAAGAGAAGGTGTACTACAAAAAAGGAAAAAGAAAAATTAATGTGCTTAACAGGGCTGTTTCAGGAGACTTGTGAAGGTCTGTGACTTGAAGTTATAG
Seq C2 exon
AAGCAAAGGCCGATAATGAACCGAGCTGTTCGCCGGCAGCTCAAGAACTGTTGACAAGGCTGGGATTTTTACTGGGAGAAGGGATCCCAAGTGCCACACACATAACCATTGAAGACAAAAATGAAACCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115183_MULTIEX1-11/15=10-12
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.942 A=0.512 C2=0.545
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000263635fB27534
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGTCAGGAAGCCCAAGTAT
R:
CATGGTTTCATTTTTGTCTTCAATGG
Band lengths:
234-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains