DreEX0008649 @ danRer10
Exon Skipping
Gene
ENSDARG00000089190 | TANC1 (2 of 2)
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr9:52628675-52660147:-
Coord C1 exon
chr9:52660052-52660147
Coord A exon
chr9:52634116-52634222
Coord C2 exon
chr9:52628675-52628846
Length
107 bp
Sequences
Splice sites
3' ss Seq
TCTAACTCTCTCCCTCTCAGGCT
3' ss Score
9.8
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
GATTGGTTAGAAAGCCCAAATATGTGGAGAGTCCTCGTATTCCTGGAGATGTGTGTGCGGCGTCGCTGAAGAAGGTGCCTGATTCTGCTACTGCTG
Seq A exon
GCTCCTCCTCCTCCACTCAGGAGTTGATGACACGCTTGGGCTTCTTGCTGGGCGAAGGCATCCCGGGCTCCACACACATACCTATGGACGGCAAGAATGACAAAAAG
Seq C2 exon
TGTCCAGTGAATCAGGGCATCAGTCCGTGCTCCACCCTGACCAGCAGCACAGCGTCTCCCAGTACAGACAGTCCCTGCTCCACTCTGAACAGCAGCGGCCGGCCAGGGCTCACAGCCGTCTGCATCACCAGCCCCAGCTCCACCCTCGACAGCAAAGACAGCGGCATCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089190-'3-5,'3-4,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.455 A=0.833 C2=0.586
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAGTCCTCGTATTCCTGG
R:
GATGATGCCGCTGTCTTTGCT
Band lengths:
243-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]