GgaINT0046902 @ galGal4
Intron Retention
Gene
ENSGALG00000012570 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr7:35998510-36001474:+
Coord C1 exon
chr7:35998510-35998611
Coord A exon
chr7:35998612-36001352
Coord C2 exon
chr7:36001353-36001474
Length
2741 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
CCCCACCCTTCTCTCTAAAGCAA
3' ss Score
7.62
Exon sequences
Seq C1 exon
GTCCGATCAGGAAGGCCAAGTATGTGGAAAGTCCTAGAGTGCCAGGTGAGGCAATTCTACTGCTGAGAAAACAATCAGGGCAAGAAGAACCCATTCAAAATG
Seq A exon
GTAAGAATCTGTTTGGTGATACTTTATCCATTCATTTCAAAGAAAGTGATAAAAAGTAATAATACTGACATTTGATTCTTTATTTTTAAGAGTGCTTAGCGAATGCCATATTCTTGTATTAAGGATGAGATGCTGTTCATTGTATTTACATGATCTTTGTAACTGTCTCAATTCTTGGAGATGTGTGCATACTGCAGGCAAAGTGATATCAACTGTTGTTAACATACTGTAGTATGCCAAAGGCCTACTAGAGGTTTTATGAATTTATTTTCAATGTAAATTGATTCCACATGTGTAGCTCTGCACTGCATACAGTTCATCATTTAGAAATTTTGTGAAAGCTTCCTAAGTAAGAAGAGGCAATAACAGCAGAATTCTGTGTTGACAAAGCTGGTAAAAGCTACCTCTAGAGCCAATGGGTGCTCTTGATGTTTTATGTTCATTACATTTGGCAAGCCCGTAACAGAATGTAGCTTTGACAGTGAATGTTGTGGTCAAAGCAGAATGACCCATAATTTGGTATATGACTGTATGCACTATATCATGGATTTCATGTGTTTAATGTTACTTTTTTTTTTTTTTTTTTTAAGTTTAAGGACCTCATTAAATTAACTGTGTGATCATCAGATTCCAGATGAGTAATTTTTGTTTTTTGTTTTTTCTTTTGCGTCAACTTTAAGGGAAACATCACTTTTAAAAACAAATGTTTTCTTTCTTTTTTTTTTTTTTTTAAAGCCTGTTATCTTTAATAAGTAATAGTGAAAATAGAATTGACTGTAATTGTTTCCTCCTTCTGTTCCTCTCTGCCCTAGGTGATATGTTATAGTTAGTCTGGTCCCTGTTGTGCTTCCATCTTCATAACAGTTTTAGTACTTGTAGTCCTCATATCTCCCTTTCCTAAAGATGACCATCTTGTAATACTCCTCCTCTTGACAGAACTGTATTCCCAGAGAAAGAGAATGCGAGTAGTCAAACCTGAAACCCAGTGTGTAAGGATTAATCAGTAGTTGGTGGGCTTGAACAACTTAGGCTCTTGGATTCTGTCCTTGTTGCTGGACCAGCATTTGTACTGTTAAAGACTTACTCAAACCTGTACAGGGTTAAAATTTAAATAAAATAATAATAGTTTTTTGTAACAGTTCATAGAGCAATGAAATAGTTGATTTAATAAACTCTTTAATTTCTAGCATTTATATTTTAAAGATAAAAATCAAAATTACACTTAGTATAGAGGAAGTACTGTTTCCAGCCAAATATTCCAAGACCTGGCAGTATCCTGAGATGCAAAAGGGCTTTTGGCACCATTTTGTAGACTTCCTCCTTTTGGCATTGTTAAAGGATGGTCAGATATTCCAGAGTAAAACCTTAAGCTGCCCACAAAGTTAAGCAGTACACGTGTTTAAGCAGGTGTTGAGCTGGAGTGAAATGCAGAAGGATGTTCTTCCAGTGAAATACTCATTTTTGCAAACGGTGGGCTTTGTTGCTCAGTAGAATAGAAACATTAATGTAAAGTTTACTGAGCAAGCTGTTCAATTCTATTAAAATCACTGTTTTCTCTGGTTTTCTTACAGTCTACAGCTGGGGAAAAATATGCTATTTCTTGTAAATGCAGTTAAACATCTGTTGTATCTTATGTGGGAAAAATTCTCACCTGACTTGCATTTGGCCTAGTAAATCTGCAAAGGAAAAACAGAAGTAAAGGAACAGTTTAGTCATCATTACTATTTTCCCGCTGTGTTTTTTGATGGTGTAGAAGTGCAGTTGAGAGGTTTATGTTTTTCTCTTTTAAACTTCATTAATAAGCCCATGCAATTACATCTCTCTCCCTTTCTTTTCTCATTCTCTGAGGCATTCCTCATCAATTAGGAACTTTTTGTTACACAAAGTTTCCAAACTGTACACTGATAAAACTGTTTTGAAGAATGCCCTTATTACCTTCCACGTGTCGGGATGAGATCCACAGACTCAGTGCCTTGCTCAGCCCACGCTAGTTGGGAAGTAGCTCAGGCTGTCCTTCACTTTTTCTTCACTACGGGACCGGGTAGTAGCTAATGCAGCTGGTGGTTCTGTAATGGAGAATTCCTGTTGTGAGCAATTTCTCAGAGTCATTAGATGATGCACCTTATTAAACTGACTATTTATACATGAGGACAAGACAGGCCAACGTGTTCTTCTTTTTAATAGTCAAAAGACTTAAATACTGTATAAATGTTTCTGCTGGGGAGGAGCTGTATAGTTTGATAGGTGATTCCAAGTTGTTGGCAATAAAGAAAAAAAATTATGGTATAGGTGCAGTATATATAAATCATCTGTGTTATTAACTCTACTTTTCACATTTTTAACATAACTTGAAACTTTATAAAAAAATTACTGTAATAGACTTTTGATCTGACAGTAAGCTGTGATAGCGTCATGCTGCTGTTGATTCATGCTAGTCATTGTGTTGATCATCAATCTAGTGATGTTTGTCTTAATATAGCTGATTGCACTTAACCATTTCTGTTTTGACTGGCAGGGTGGTGGATTTTTTGTTTGTTTTTATCCCCAGATTTGTGCAGCTATGCAGAGAATCCAAGGCCTACCAACAATTTAAAGACTATTGTGGCATTAGCTACTCTGTTAGAGGAGCTGATAGAAAATCTGCTGCTTGCATCTGATTGTACTCTTTCTACCTCTTGTAACATTTTCCAAATGTAACTCTAATTTTCACCAACTTTTCCTCCCCACCCTTCTCTCTAAAG
Seq C2 exon
CAAAGCCTGATAAAGACTCAAGCTGTTCTCCTGCAGCACAAGAATTGATGACGAGATTGGGTTTTTTACTAGGAGAAGGGATACCAACATCTGCTCATATAGAAGAAAAAAATGAATCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012570:ENSGALT00000020527:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.843 A=NA C2=0.732
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]