GgaINT0046902 @ galGal3
Intron Retention
Gene
ENSGALG00000012570 | TANC1
Description
NA
Coordinates
chr7:38134846-38137810:+
Coord C1 exon
chr7:38134846-38134947
Coord A exon
chr7:38134948-38137688
Coord C2 exon
chr7:38137689-38137810
Length
2741 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
CCCCACCCTTCTCTCTAAAGCAA
3' ss Score
7.62
Exon sequences
Seq C1 exon
GTCCGATCAGGAAGGCCAAGTATGTGGAAAGTCCTAGAGTGCCAGGTGAGGCAATTCTACTGCTGAGAAAACAATCAGGGCAAGAAGAACCCATTCAAAATG
Seq A exon
GTAAGAATCTGTTTGGTGATACTTTATCCATTCATTTCAAAGAAAGTGATAAAAAGTAATAATACTGACATTTGATTCTTTATTTTTAAGAGTGCTTAGCGAATGCCATATTCTTGTATTAAGGATGAGATGCTGTTCATTGTATTTACATGATCTTTGTAACTGTCTCAATTCTTGGAGATGTGTGCATACTGCAGGCAAAGTGATATCAACTGTTGTTAACATACTGTAGTATGCCAAAGGCCTACTAGAGGTTTTATGAATTTATTTTCAATGTAAATTGATTCCACATGTGTAGCTCTGCACTGCATACAGTTCATCATTTAGAAATTTTGTGAAAGCTTCCTAAGTAAGAAGAGGCAATAACAGCAGAATTCTGTGTTGACAAAGCTGGTAAAAGCTACCTCTAGAGCCAATGGGTGCTCTTGATGTTTTATGTTCATTACATTTGGCAAGCCCGTAACAGAATGTAGCTTTGACAGTGAATGTTGTGGTCAAAGCAGAATGACCCATAATTTGGTATATGACTGTATGCACTATATCATGGATTTCATGTGTTTAATGTTACTTTTTTTTTTTTTTTTTTTAAGTTTAAGGACCTCATTAAATTAACTGTGTGATCATCAGATTCCAGATGAGTAATTTTTGTTTTTTGTTTTTTCTTTTGCGTCAACTTTAAGGGAAACATCACTTTTAAAAACAAATGTTTTCTTTCTTTTTTTTTTTTTTTTAAAGCCTGTTATCTTTAATAAGTAATAGTGAAAATAGAATTGACTGTAATTGTTTCCTCCTTCTGTTCCTCTCTGCCCTAGGTGATATGTTATAGTTAGTCTGGTCCCTGTTGTGCTTCCATCTTCATAACAGTTTTAGTACTTGTAGTCCTCATATCTCCCTTTCCTAAAGATGACCATCTTGTAATACTCCTCCTCTTGACAGAACTGTATTCCCAGAGAAAGAGAATGCGAGTAGTCAAACCTGAAACCCAGTGTGTAAGGATTAATCAGTAGTTGGTGGGCTTGAACAACTTAGGCTCTTGGATTCTGTCCTTGTTGCTGGACCAGCATTTGTACTGTTAAAGACTTACTCAAACCTGTACAGGGTTAAAATTTAAATAAAATAATAATAGTTTTTTGTAACAGTTCATAGAGCAATGAAATAGTTGATTTAATAAACTCTTTAATTTCTAGCATTTATATTTTAAAGATAAAAATCAAAATTACACTTAGTATAGAGGAAGTACTGTTTCCAGCCAAATATTCCAAGACCTGGCAGTATCCTGAGATGCAAAAGGGCTTTTGGCACCATTTTGTAGACTTCCTCCTTTTGGCATTGTTAAAGGATGGTCAGATATTCCAGAGTAAAACCTTAAGCTGCCCACAAAGTTAAGCAGTACACGTGTTTAAGCAGGTGTTGAGCTGGAGTGAAATGCAGAAGGATGTTCTTCCAGTGAAATACTCATTTTTGCAAACGGTGGGCTTTGTTGCTCAGTAGAATAGAAACATTAATGTAAAGTTTACTGAGCAAGCTGTTCAATTCTATTAAAATCACTGTTTTCTCTGGTTTTCTTACAGTCTACAGCTGGGGAAAAATATGCTATTTCTTGTAAATGCAGTTAAACATCTGTTGTATCTTATGTGGGAAAAATTCTCACCTGACTTGCATTTGGCCTAGTAAATCTGCAAAGGAAAAACAGAAGTAAAGGAACAGTTTAGTCATCATTACTATTTTCCCGCTGTGTTTTTTGATGGTGTAGAAGTGCAGTTGAGAGGTTTATGTTTTTCTCTTTTAAACTTCATTAATAAGCCCATGCAATTACATCTCTCTCCCTTTCTTTTCTCATTCTCTGAGGCATTCCTCATCAATTAGGAACTTTTTGTTACACAAAGTTTCCAAACTGTACACTGATAAAACTGTTTTGAAGAATGCCCTTATTACCTTCCACGTGTCGGGATGAGATCCACAGACTCAGTGCCTTGCTCAGCCCACGCTAGTTGGGAAGTAGCTCAGGCTGTCCTTCACTTTTTCTTCACTACGGGACCGGGTAGTAGCTAATGCAGCTGGTGGTTCTGTAATGGAGAATTCCTGTTGTGAGCAATTTCTCAGAGTCATTAGATGATGCACCTTATTAAACTGACTATTTATACATGAGGACAAGACAGGCCAACGTGTTCTTCTTTTTAATAGTCAAAAGACTTAAATACTGTATAAATGTTTCTGCTGGGGAGGAGCTGTATAGTTTGATAGGTGATTCCAAGTTGTTGGCAATAAAGAAAAAAAATTATGGTATAGGTGCAGTATATATAAATCATCTGTGTTATTAACTCTACTTTTCACATTTTTAACATAACTTGAAACTTTATAAAAAAATTACTGTAATAGACTTTTGATCTGACAGTAAGCTGTGATAGCGTCATGCTGCTGTTGATTCATGCTAGTCATTGTGTTGATCATCAATCTAGTGATGTTTGTCTTAATATAGCTGATTGCACTTAACCATTTCTGTTTTGACTGGCAGGGTGGTGGATTTTTTGTTTGTTTTTATCCCCAGATTTGTGCAGCTATGCAGAGAATCCAAGGCCTACCAACAATTTAAAGACTATTGTGGCATTAGCTACTCTGTTAGAGGAGCTGATAGAAAATCTGCTGCTTGCATCTGATTGTACTCTTTCTACCTCTTGTAACATTTTCCAAATGTAACTCTAATTTTCACCAACTTTTCCTCCCCACCCTTCTCTCTAAAG
Seq C2 exon
CAAAGCCTGATAAAGACTCAAGCTGTTCTCCTGCAGCACAAGAATTGATGACGAGATTGGGTTTTTTACTAGGAGAAGGGATACCAACATCTGCTCATATAGAAGAAAAAAATGAATCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012570:ENSGALT00000020527:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.843 A=NA C2=0.732
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]