GgaEX0019959 @ galGal3
Exon Skipping
Gene
ENSGALG00000013251 | F1NK63_CHICK
Description
NA
Coordinates
chr1:69127467-69134410:+
Coord C1 exon
chr1:69127467-69127915
Coord A exon
chr1:69128126-69128223
Coord C2 exon
chr1:69131555-69134410
Length
98 bp
Sequences
Splice sites
3' ss Seq
ATTTCTTTGATTCCTTACAGGAT
3' ss Score
10.99
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
GGGAGGCAGTGAGCCCCACGGAGACACACCGCGGGGAGCAGCCCCCGTCTCGCATCTCGCTAGGTGGACTATGGTGGCAGGAAGATGTTGGCTCGGAAGAGTATCATCCCTGAGGAGTATGTGCTGGCACGGATCGCTGCCGAGAACCTGCGCAAGCCGCGCATCCGGGACCGGCCGCGCAAAGCCCGCTTCATCGCCAAGAACGGAGCATGCAACCTGGCCCACAAGAACATCCGTGAGCAGGGGCGATTCCTGCAAGACATCTTCACCACCTTGGTGGACCTGAAATGGCGTCACACGCTGGTCATCTTCACCATGTCCTTCCTGTGCAGCTGGCTGCTCTTCGCCATGATGTGGTGGCTGGTGGCTTTCGCCCACGGCGACATGGACCCGAGCACAGAGAACACTGCAAACAACACCAAGTGGACTCCGTGCGTGACATGTGTCAG
Seq A exon
GATCTGAAAGAGAGGGAGACCTGCTGCTTTTCATGTGTCTCCACACTCTGTGGGTGACATACCTTGCCTGTCAAGATAAGAGCCTGCTACAAGAGTGG
Seq C2 exon
GTCTTTCACCTCTGCTTTCCTCTTCTCCATTGAAGTTCAGGTGACCATTGGTTTTGGGGGCAGGATGATGACAGAGGAATGTCCCTTGGCCATCACGGTCTTGATCCTACAGAACATTGTGGGTCTAATAATCAATGCTGTCATGTTGGGCTGCATCTTCATGAAAACCGCTCAAGCTCACAGGCGGGCAGAGACCTTGATTTTCAGCCGGCAGGCGGTCATTGCCGTTCGAAATGGCAAACTTTGCTTCATGTTTCGAGTGGGAGACCTGAGGAAGAGCATGATCATTAGTGCCTCTGTGAGAATCCAGGTTGTGAGGAAGACTACAACCCCTGAGGGAGAAGTCATACCCATTCACCAAGTAGATATCCCCGTAGATAACCCCATTGAAAGTAACAATATTTTCCTGGTGGCTCCCTTAATCATTTGTCACGTCATAGACAAGCGCAGTCCTCTTTATGATATCTCTGCTGCTGACCTGGCGCTCCAGGATCTGGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013251_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
NA
Show structural model
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.150
Domain overlap (PFAM):
C1:
PF0100715=IRK=PU(24.9=69.7)
A:
PF0100715=IRK=PD(1.1=33.3)
C2:
PF0100715=IRK=PD(74.8=84.7)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTCTTCGCCATGATGT
R:
ATCCTGCCCCCAAAACCAATG
Band lengths:
180-278
Functional annotations
There are 0 annotated functions for this event