GgaEX0019959 @ galGal4
Exon Skipping
Gene
ENSGALG00000026373 | KCNJ8
Description
potassium channel, inwardly rectifying subfamily J, member 8 [Source:HGNC Symbol;Acc:HGNC:6269]
Coordinates
chr1:67103479-67111591:+
Coord C1 exon
chr1:67103479-67103927
Coord A exon
chr1:67104138-67104235
Coord C2 exon
chr1:67107567-67111591
Length
98 bp
Sequences
Splice sites
3' ss Seq
ATTTCTTTGATTCCTTACAGGAT
3' ss Score
10.99
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
GGGAGGCAGTGAGCCCCACGGAGACACACCGCGGGGAGCAGCCCCCGTCTCGCATCTCGCTAGGTGGACTATGGTGGCAGGAAGATGTTGGCTCGGAAGAGTATCATCCCTGAGGAGTATGTGCTGGCACGGATCGCTGCCGAGAACCTGCGCAAGCCGCGCATCCGGGACCGGCCGCGCAAAGCCCGCTTCATCGCCAAGAACGGAGCATGCAACCTGGCCCACAAGAACATCCGTGAGCAGGGGCGATTCCTGCAAGACATCTTCACCACCTTGGTGGACCTGAAATGGCGTCACACGCTGGTCATCTTCACCATGTCCTTCCTGTGCAGCTGGCTGCTCTTCGCCATGATGTGGTGGCTGGTGGCTTTCGCCCACGGCGACATGGACCCGAGCACAGAGAACACTGCAAACAACACCAAGTGGACTCCGTGCGTGACATGTGTCAG
Seq A exon
GATCTGAAAGAGAGGGAGACCTGCTGCTTTTCATGTGTCTCCACACTCTGTGGGTGACATACCTTGCCTGTCAAGATAAGAGCCTGCTACAAGAGTGG
Seq C2 exon
GTCTTTCACCTCTGCTTTCCTCTTCTCCATTGAAGTTCAGGTGACCATTGGTTTTGGGGGCAGGATGATGACAGAGGAATGTCCCTTGGCCATCACGGTCTTGATCCTACAGAACATTGTGGGTCTAATAATCAATGCTGTCATGTTGGGCTGCATCTTCATGAAAACCGCTCAAGCTCACAGGCGGGCAGAGACCTTGATTTTCAGCCGGCAGGCGGTCATTGCCGTTCGAAATGGCAAACTTTGCTTCATGTTTCGAGTGGGAGACCTGAGGAAGAGCATGATCATTAGTGCCTCTGTGAGAATCCAGGTTGTGAGGAAGACTACAACCCCTGAGGGAGAAGTCATACCCATTCACCAAGTAGATATCCCCGTAGATAACCCCATTGAAAGTAACAATATTTTCCTGGTGGCTCCCTTAATCATTTGTCACGTCATAGACAAGCGCAGTCCTCTTTATGATATCTCTGCTGCTGACCTGGCGCTCCAGGATCTGGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026373_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.025 A=0.000 C2=0.157
Domain overlap (PFAM):
C1:
PF0100715=IRK=PU(24.9=69.7)
A:
PF0100715=IRK=PD(1.1=33.3)
C2:
PF0100715=IRK=PD(74.8=84.7)
Main Inclusion Isoform:
ENSGALT00000044443fB2420
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTCTTCGCCATGATGT
R:
ATCCTGCCCCCAAAACCAATG
Band lengths:
180-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]