GgaINT0119910 @ galGal4
Intron Retention
Gene
ENSGALG00000026373 | KCNJ8
Description
potassium channel, inwardly rectifying subfamily J, member 8 [Source:HGNC Symbol;Acc:HGNC:6269]
Coordinates
chr1:67103479-67111591:+
Coord C1 exon
chr1:67103479-67103927
Coord A exon
chr1:67103928-67107566
Coord C2 exon
chr1:67107567-67111591
Length
3639 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
TGCACAATCTTCCTCTCCAGGTC
3' ss Score
10.99
Exon sequences
Seq C1 exon
GGGAGGCAGTGAGCCCCACGGAGACACACCGCGGGGAGCAGCCCCCGTCTCGCATCTCGCTAGGTGGACTATGGTGGCAGGAAGATGTTGGCTCGGAAGAGTATCATCCCTGAGGAGTATGTGCTGGCACGGATCGCTGCCGAGAACCTGCGCAAGCCGCGCATCCGGGACCGGCCGCGCAAAGCCCGCTTCATCGCCAAGAACGGAGCATGCAACCTGGCCCACAAGAACATCCGTGAGCAGGGGCGATTCCTGCAAGACATCTTCACCACCTTGGTGGACCTGAAATGGCGTCACACGCTGGTCATCTTCACCATGTCCTTCCTGTGCAGCTGGCTGCTCTTCGCCATGATGTGGTGGCTGGTGGCTTTCGCCCACGGCGACATGGACCCGAGCACAGAGAACACTGCAAACAACACCAAGTGGACTCCGTGCGTGACATGTGTCAG
Seq A exon
GTACAGCGCAGTCGGGGGGACAGAGAAAGGAGGGGGACACGGCTGCCTGCTGCCCCGTCGATGACCGAAATGCAGTTTTTGGTTTACGTGAACCATTATGTTTGGTTGAGACAATTGAAAAGCGCGGTGTTTTCCTCTAGATTACGTAAATTCAGCAAGCCTTCTGGGCTTGGAAAATGCTGTACTGTAGATTTCTTTGATTCCTTACAGGATCTGAAAGAGAGGGAGACCTGCTGCTTTTCATGTGTCTCCACACTCTGTGGGTGACATACCTTGCCTGTCAAGATAAGAGCCTGCTACAAGAGTGGGTATGTGTTACACGTATCGTAATGTTGTCTGTGGCAGCAGGAGCATCCCGAGCGTGGTGCGAGCTGTGAGCCGCGCTGGTGGAAGTTGGCCCATCCCAAAAGCGGTGCCTGGGAGGCAGGCACCCACCATAGGTGTCAGCTGGCAAGAAAGGTGCTGCTTAGGGCAAAAGGAGATGTGCTTCAGGCTGACACTTACGAGACGGCTCCAAAATGCGTGGTCTTTGATGAGGCCAGCAGTTTGACGGACGAACTGCTTCCATGATGTGCATGATTTATCATATAGTGAAAGCTTTAGGGACTTCTGGGTTAAACGTCCGCTGTTAAGAAAAGTATTTTCCTCTCTGTCCCCAAATGACAATTTTCAAGGCTCTGGCAAACTAACGCGTAACTACGCAGGACAGGGGGAGCATTTGTTAATGGGAGATGAGGGTAAGCAATAAGATCACTCTGTCATCTCATCGGTAACACATCTTTTTATAGCAGCAGGTGCTTTTAAGCAGGACAGTCTGGGTTCAGGGTGGCCAGGCTGCCCTATAGCAGCTGCCTTGACACACTGCAGTAACTGTGTGAGGGGCTGAGAGTTCCTGCTTCTCTTAACTTTCTGTTGCAGACAGTTTTTGAGGCACCTCAGCAAGCTTGAAGGCACCTCAGATCCGACTCGTGAGGCAATGGAGATTTCATTCTCCTTATTCTTATTTGTATTTTTATTTTATTATAATTATTATTATTTTGACACTGTTTTGCTAAATGGGAAATTTCCAAGGGGAAGAGAAAACAGAGATTTTCCAAGCTGACCTTCATCAAGCTGGGGATCTGGAGCAGTGGGAGGTGGCTGTCTTATTTCCTTTCCATTAAGTGGTCGGAAACAGTTGCCTCTGACATGAGACATCATGATCCAGCTGGCGCGCACTGGGGATGTCCTCCAGGGTGTCACCCCCTGCCTTTCTGGTGTACTGCTCCCAGAGGGAAGCACGTGTGAGATATATCCAACCCCACCAACTTTCTGGGGTCCCCTGGGAGGATGTCACCCTACTTGGTGGAGGCCCCCTCAACGTGTATCCCCATGGTGCTCCTGGGCCACTGCACAGAGCCTGGTCTGAGGGCTGAGGCCACCATGCCACCAGGACAAAGCAGAGCCATGGCCCCTCGCTATCTCCCTGTAGCCCCAAATGCAGCATCCTGTGCCAGCAGTGTCCTCCCTGCCACAGAGACTGTCTGAAGGCTGGCAATTAGCAGAGCCAATGAACCTGTGTGCCTCTGAGCTTTAGCCCTTGGCAAACAACACCTGTCACACTCTCCAGTGAGTACCTGAGGTGTTTCAGCCAACAGCTGCCTATGTATCCAGGGAAAATCTTTTCCCTACATCTTTTTAAATCTGGCCACCACCTTGGACACAATATGAAATAATACAATCCGAAATAACAGTACGATTGCTGATATTTTTAAGAGTAGCGAGTTGCTGGATTTAAAATGTACTTCATATTGCGTATATAGCAATTCACATATAATATTAATATCATATCTGTCACAATAGTGGCAAATATTTTTTTAATTTACTTTCCTGAGATTTAGGCCCACAGATATTTCAGGAGAGCTTTTTTTGGATGGGTGCCATTACAAATGTATAGGGAAATCTGGCTTTAGGAGATTTTTACCACTGCTACAGGGAACTTGCACAGCACTTCAATTTTTCAAAGTACTGCAGAATTTCTAAGGCTAGGAGCACTTTTGCCACACAAAGCAGATGTTATCCAAAGAGAAAAACTGTTGCAGAGCTCAAAAGTGAGAGACCTGGGAGTAGTGTGGTTTGACATTCATGGCTCCATCTTCACTTGTTCACCATGCTGTACAAACTTGTTGCTTCTGATACTGACACTCTAAAAAGGTGGGTTTTTTCCTTTTTTTTTAATGATGACTATCAAAGGGAATCAGAATATTTAATTGCACAGAGCTTTAAGTTAAATTAAATTAAGGTTTAGCTGGAAGTTTTATTCTGCATGTAGATGACTACTCAATAACATAGAAATCATTCCATGAATGAATGAACTCCTTCAACCCTGATTTCTTCTTGTATAAAATACAAGAATAAACTCCTCAGTGTGAAAGAATCTGCCAAAGATTAACAAAACAGAAAAGAAAAAAAGAGATTAGGTTCTTTCAAAGATGTCTGTGCAGAGACTGGCTTGTTTTCTGAAAGATGACCTACAGAACATTATCCCTGATATTGCCTGTTCTATTTTAATGTCTCTTCTTGATCCCAGGCCTTAGAACCATCTTCATAGAGAAGATTTATGTTTTCCATAGGTAAAGCCATACTGAGCATGGGGATGCTTCAAATGTTGGTGGATTGCACTGTGTCAAAAGGGTCACTATGTTAGTTCATGAGACCCTGTGTGCAAAATATCTACTGCATAAACCCCAAGGTACAGGTTTGGGGTATGAGAGACTTTGGTGAAGGAAGAGTCATTTTATAAAAGGAAATGAAATAACCTGGTGCTTATTTGAGAAGTGATGTTGTGCACTATTGCAAATAACATGTTTTGAAAAGTTTGCAGACAGCATCCTCTGATGTCCAACAGTACAGCATATTAGAGATACACTTCTACAACCCACTGCTGTGTTGAAGTTCTCCAGCTAGCCTTGCCATGGCAGTGAGCTAAACCCAAACCCTGGGCACAGCATTGTCCTTCAGCTGGGATGTGTCCTCCCTCTGCAACCTGATTCCATGGGCTCAGGTGCAAGGCATGCAAGGGTCCGGGAGGTGTGATAAAGCTGAGAGTATCCCCTTTCCCTCCAGGAAAACTTGCTAAAGGAGCTAATGACAAAGAGAGTCAGGTTTTGAAAATGAAGTCCTGCAGCTTTCCCAGTTTCCTTTCCCTGTGCAGGCTGGTGGGAGAACCCCAGTGTGCCAGCCAAGTTGCTCACCTGTCTCCAAATGCACCACTCCCTGCCAAGAGCTTCATGGGATGTAGAAGGTGGAAAGTCATGCTGGGAGTTAAAGCACTGTCAGCTAACATGGTGTGCCACATTTATCTGAACAGGGAATCTAGTGAGCTTCTCAGGGTCATACAGAATTACAAATGGTCTTTTAGGAGCTCAGGCTCTCACGTTTTCCCTCTCAACATTATATGCATCACTGATCATACAAACACTGAATCACCAAATTCATGGTGATTCAGTGTTTGTTAACATGCAATGTTAACAGAACGCTTAAATTTACAAGAACTGCAGAAATAGACACTTAAGTTTGTTTCTACTAAGCATATGCTAATAGCTAATCAGTTTATGTTTGATGAGCTTTGAGTTAACTCTGCACAATCTTCCTCTCCAG
Seq C2 exon
GTCTTTCACCTCTGCTTTCCTCTTCTCCATTGAAGTTCAGGTGACCATTGGTTTTGGGGGCAGGATGATGACAGAGGAATGTCCCTTGGCCATCACGGTCTTGATCCTACAGAACATTGTGGGTCTAATAATCAATGCTGTCATGTTGGGCTGCATCTTCATGAAAACCGCTCAAGCTCACAGGCGGGCAGAGACCTTGATTTTCAGCCGGCAGGCGGTCATTGCCGTTCGAAATGGCAAACTTTGCTTCATGTTTCGAGTGGGAGACCTGAGGAAGAGCATGATCATTAGTGCCTCTGTGAGAATCCAGGTTGTGAGGAAGACTACAACCCCTGAGGGAGAAGTCATACCCATTCACCAAGTAGATATCCCCGTAGATAACCCCATTGAAAGTAACAATATTTTCCTGGTGGCTCCCTTAATCATTTGTCACGTCATAGACAAGCGCAGTCCTCTTTATGATATCTCTGCTGCTGACCTGGCGCTCCAGGATCTGGAGCTCATAGTGATACTTGAAGGAGTCGTGGAGACGACTGGCATCACAACGCAGGCGAGAACCTCCTACATAGCAGAGGAGATCCTGTGGGGTCACCGCTTTGTGCCCATCGTCACTGAAGAGGAAGGTGTTTACGCCGTTGACTACTCCAAATTTGGCAACACAGTGAAAGTGGCAGCGCCGCGTTGCAGCGCACGAGAGCTTGACGAAAAGCCCTCAATTCTCATCCAGACCCTGCAGAAAAGCGAGCTGTCCCACCAGAACTCCCTGCGAAAACGCAACTCCATGAGGAGAAACAACTCCATTCGGAGGAGCAACTCCATGAGGAGAACCAACCCGTCCCTCATGGTGCCCAAAGTGCAGTTCATCACACCCGAGGGGAGCCAGAGTGCCTCCGAAACGTGATGCACAGCCCTGTGTGGGATCAGGGGGGTTCAAAAATAGATTTCATTCTACTGAAGAAAATGAGAGTGCAGAAAAGAACTGGGCAAGGACTATTTATTCCATTACTTACTGAAAGCACTACCTAATGGCATTAGGAAACACGTTAGCACTTAGTGTATGAATTAATAAAAGTGGCACGTACACTAAAGAAAACACAGTTCACTTATGTAATATAATGTGTATTTATACTTCTGATGGCATGCTAATTTTTTTAATCATATTTTGTCTATCTCTTATTTTGTCTCTTTCTCATCTTTCTCCACTGTCTGTCACAAAGTGTGTTTTTACCCTGTAGAAGTGGGCTACTCACCCACAGGCAGAAGGTCAAAACGGCTACGTATCAACAGCTTGCACATATTTTGTGTGAGATATTTGGATATCAGTTTTTTAAGGGCGAATCCCTTGTTCTCTTGAAAGGAGTAGCTAAATTCCTCAATGATTTAACAGGAGAAGAGGCAGGATTTTCCCATCAGTTTTCTAGATCCTTTCTTTCTGTTGTTTTATAGCAAAGATGTTTTGAAAGCAGTCCCAGTTGGTGAAGTGACCCGGACATGCCAGAAGAAAGCTTCTGCAGGTCTGAGCAGCACCAGGATTAAAAACAGCATTTCAGCAGACCCACAAAATGGTACAGCCTCTTGCAAGGTGCTGCTCTTGTCCTGCAGGTGAGATATAGCGCTGCAGGACAGTACATGTTTGTTACGTATCTGCAACCCATGCTGAGAGATTCAAGTGTTCTCAGCCTCCCCTTGAGCTTCTGTGGTGCTAAAGCTGAAGAAAGCACACAGCTTTTCAACATTCTCCTCGTATTGGTTGAAGACCAAATCCTGTTGTTGTTTTTGTTAGTCTTGCAAATTAACATGCTGAAGACAAGAAATCTATTTCTTTCACTTACATTAGTTTTTGTAGGGTTAAGTCTGTTTGCTTCAGCAAAAGGTTGTTGTTCTTTTTTTCCCCAGTGTGAATTCAATGAATGGGAATGAGAGGGGATCATGGCAGTAATATTACAAGTAATAGTATTTTCAAAGCCCTCTGAGTAGTTTTCAGGTGATGCTGCAGAAGTACTACCTTTTAGCAATGTCACACTTGTGTTTTTATACAAAATGACATTGAAATTTGGTGGTGAGCACCATTTCTCTTCAAACCACAGGGGGCATTTCTTATCTAGAACCTTTGCCAAAGTGTCACCACAAGATTTTCTAGAAGAGTAAGTACAAGTAAAACAACTAATTGTGTCACATTTGGTAACGCTAAGTGGATGGATACTTCTTTCCCCTGTGAATACCAAGTATAATTATGGACAAATTCTTGTTCACAGAAGTTGCCTTAATGTCTCTGGCTCAGGAAAGGTACTATTTCTGTGCTGACTCAGTAAGACACCCAACCACTTAAAAACTCCTGTGATGTTAAATATCTGCTTACTCCTTCCAGGTTATGCAGTCAAGAGCAATGCTGGATTCTCATTCTCTTTGGAAGCCAGTTCATCAGCACTTGTACAGTCACTTTACAGCTTAATTTAGAGTTGGGTGGTGGCATGGAAGGGCAGGGCTGTGTAATGTAACATCCTTATATGTGGAGCAGGTACTGTCCATGAAATAAACACCAACAAAATGCTTCATCTGAAGCACTAACGGAAACTGAAGTTTCTGCTAAAAGTGTTTATTCCTGGCCTGCCCATTAATGTTCTGGGAGGATGTCTGGTGAACATCTGGACATATTTATATGTCCGTTGTGTGTCCAAACAACGAACATCTGTAGCTTCCAAGAAGAGTCAGAATAAACGTATACAATTTGTCTCTGGTCTACATTTGCAGGGCTATGAATTTCTGTGAGGCAGCCTGCTTGCAATACAATTAAGTCAAATGCTGTACAAAAGCAAATTTTCTACAAAATAAAAAAGTGACAATAATGATTTATCCTGTCTCTGATTTTCTGCTCATGTCTTTCCTTTTTCTTTCTATTCTCCATTCATTTTTTCTGGATTATCAGTCCCTCTTGTCCCTCCTCCTTTTCCACAGTCTCTTTGAGTAATAATTTAATATTTTTTAAATATTTTCTTAGTCTTTCAAGAGCTTCTCTATTTTAAATAGGAAAATGACAGGGAGAGCCTTTGTAGTCTCTGTGGGTAGCCAGAAGATTCAGAGTTACTGTGATGGGGACATGTAAAGCAAACAGAGAGCACTCAGAGGGGATACAAAGCATAGTGCTCCAGGGCTGAAGCCAACCTCCAAGTAACGGTATTTGGAGGGAGCTTCCCCCAGTAGCAGGTCACTCCACAGTTGTCACTGTCATGTTTCCTTGTGCTCTCTTCCAACACGTCTGCAGTGAGCCAGGGTCAGGGCAGGACCTGGGGTGGTCACACCCTGATCCAGGAGGGTGAATAGGGGCCTAGAGGAGGTACAGCAGACAACATACATCCCAATCACCCTTCCTGGGCAGCCCCACTGCGCCCATCTGCAGCCTGCTCTGCCACCAAACTTGCCTGGAGCCTTCCCTATGTCATGCTTCTAGCTTCTCCAAAAATGATCCCACTCCTGAGCATTGCATCACAGGTATGTGCTGCACCATAATAGTTTGCCCTTACAAGCGAGCCGTGTGGCTCCATCCACAGAAGAATTATCTCAGCCTTTCTGGGACACTCAAGGCATCATGTGGCGAAGGATTCAGATTTAGCTAATATCTCATACACAGAATAGGCCTTCACCATAAAGCCACATCTTACTGTAACACCCTGGGTCACTTTAGAGGCATAGGCCTCACCGTGCCTCACTGCCATCTTGAATGCATTTCACAAAGGCACACACCTTCTCCTTTGCATAAAATTCAGGCAAGGCATTATGCTTTTTCTTTTCCATCTGGAAACCAGTTATGTGCACTCCACTCATGCTGACAGAAGAAACAGTGCTAATTTTGCATATCTTTTCTCTCTTCACAAACTAAGATTAAGGACATTTTGTGAAATCAGTTTTCTGGCTTTTCAGTGATTATTATTAGCAAATGCTTGTTGATGCAAGCTGAAAAAGTAGTTTGTGCAAGACCAGAAAGGAACTTTGTCTGGAGAAAAGCATGAGATATTATATGATGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026373:ENSGALT00000044443:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=NA C2=0.157
Domain overlap (PFAM):
C1:
PF0100715=IRK=PU(24.9=69.7)
A:
NA
C2:
PF0100715=IRK=PD(74.8=84.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]