HsaINT0084478 @ hg19
Intron Retention
Gene
ENSG00000121361 | KCNJ8
Description
potassium inwardly-rectifying channel, subfamily J, member 8 [Source:HGNC Symbol;Acc:6269]
Coordinates
chr12:21917889-21926620:-
Coord C1 exon
chr12:21926177-21926620
Coord A exon
chr12:21919558-21926176
Coord C2 exon
chr12:21917889-21919557
Length
6619 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TCTGATATCATTCCTCACAGGTC
3' ss Score
9.04
Exon sequences
Seq C1 exon
GAGGACGGGTGTCCAGGGACGGAGAGGCAGGTGAGAGGGAGGTGGCTAAGCTGGCTATGGTGACAGGACGATGTTGGCCAGAAAGAGTATCATCCCGGAGGAGTATGTGCTGGCGCGCATCGCCGCAGAGAACCTGCGCAAGCCGCGCATCCGAGACCGCCTCCCCAAAGCCCGCTTCATCGCCAAGAGCGGGGCCTGCAACCTGGCGCATAAGAACATCCGTGAGCAAGGACGCTTTCTACAGGACATCTTCACCACCTTGGTGGACCTGAAATGGCGCCACACGCTGGTCATCTTTACCATGTCCTTCCTCTGCAGCTGGCTGCTCTTCGCTATCATGTGGTGGCTGGTGGCCTTTGCCCATGGGGACATCTATGCTTACATGGAGAAAAGTGGAATGGAGAAAAGTGGTTTGGAGTCCACTGTGTGTGTGACTAATGTCAG
Seq A exon
GTAAGAATGTAGTGGGATGAGGCAGGGGTTGAAAACAGTAGAGAAAAAATGTCAAAATGCCCTTTCTCTTATCATTCTGTTATTTAATTGAAAGTGAAATAAAGGGTTTGTTTTAGAATCTTCAGAAACAAAAAAGCACAATAAAGAACAACACCTAACACAGTAAGTATTTTTTAAATGCAGCTTTATGGAGAAGAGTCTCTGAAAACCTGAGCTTCAGTCCTTTGGACTAGCCTTGAAAATGTTATACCAGTTATCAAAAAAAAATTGTAATTCAAAGGATTACACAGAGTGCTTTACTCCAAAAGCGCACACATTGAGTTCAGTATGAAAAAGCTGTTGTCCATAGTTTCAGTGCCCACAGGTAAATATCTCTGATCAACAAAAAATATTGTGCTAGTGGACATTTTTCTTGACTCTTCTAACCCATGACATTTTCAGAAATAATAAGAAAAAAATGGGAAGGCCCTAGGGGGAGAGTGTCCTAGATTAAAAATCTACTAAAAAATGAAATAAATATCATCCCTTCTTTATCGAGATTATCATAACATAGCTGATTGCTTGCACTGGATTCAGAAATTAAAAGTTATGCTAAGATTCAGAACTAGAAATTGCTAATTTTTAATGACAATTAGTCCAAAATTTTATGGAAGGGGTTATATAGAAGCAATTTAATTTTGTACTCTTCTTTCAAAGTTTAAATAGAATAGGGACAAGATAGTTCTTAGATTACCTAACTTTGGCTTCTTTCTCATATCATAAGTATCTCAAAGACAGGTAAATTGATTTCAGTGATTCACCTCTCTTGCTTTCACATGGTTTAAGAACATTTAGTTGAGGTGATTTCTTTGTTTTTTTCGGGGGGAGGTGGAAAGAGATAAATTATATCAATTACCAAGATGTTCACTGTGAAGCAAAAGAGTAGTAATAATACTGGAAAATTTTCCAAAACATTTTTAAAAGAACATTTTAAATTCACATAATTCACAAAGCAAAGAAACTTGAAAAAGCATTATGATACCAGGAAACTGTAAAGAATGGGACCTCTAGTGACCCTGAAACCTTATTAAGCTAGCATATCACTGCAGAAAGTGGACCCCAGACTGTGAACTTGTCCACCCTTCCATTTGCTAAGGAACTACAATGCCAGCCTTTCAAGGAGGAAGGCAGCATTAGTGCGCAGAGATCACACACCACAGATTTCAGCTCAAATTCTGAGCAGCAAAAACTGTATTGAATTGATCTATTGCTTTTAATATTGATTAGATATTATTTTCTTTTTTCAAACTTCTCACAAACTGTTGTCTCAAAGAAAATGCAGCTGGAAAACATAGATCATCAGTATACCAGATATAAAGAAAACACAATACTTAAAATATCCGTTAAAACGTTCAATAGATACTCTAAGATCAAATATCATTATCTATAATATATATCTTTAAGAAACTTACTGGCACTGATAATTGGTGAATCATTTTCATATCAAAATAAAGTTTTAATCTAAATTATATGATACTGATAAAAAGAGAAAAAAGAAATGGTAACAGCAAACCTTAAAAATCTTCATTCTCTCCCAATGAGAATGTAAAAGGTGACTAATAATAATTCTAATTCTTTGCATTTTTCCCTTTGTGAATTCAATGTCCAACCATATCACTAAAATTGGAAACAACATTTTTCATTGAATATTCACCAGTATTTCCAAATAATGTTTGACCATTCTTCTCTTAGGGTGACTCATTTTCTCCTCCATGTATTTTCTCCTGCAAGGAGTCTCTTTGACTCCATTTAATATGAGTCAAAAAATAGACCAATATATTTCCTCTTTCTCGATATTATCCAGCCTACCTCTTTCTGTAACAGAACAAAGAAACAGCTAAACACTTTTATCTCTTGAGATTGTTTAGCATAGCAAGTGTCAGTAAAAAGCTGGGTCTTGTACCATATGTAATATTTAGAATTCATAAACAATATACAAAATGTGGCTCATGAATAGTCTCTTAAACCATTAAAACAAACTATTTGGGATATTTATCATTAGACTGCTCTCTGAGGTATGGATACATTATCAGAAATCAGTGTTGTATCCATACCCCTTCTCTGGGGTCCATTTTTATTCTTGCCATGTTTTGGGGCTATACCAGATATCTTTTTGTGGGTAGTTAGTGCAATAGGCAATTACTGTAGTTTTCCATGAATCATTTTAGCAACAAAAGAGAAAGGCAACTTTCGCACTTCACTTAAAAGCTAATCAAAAGAATAATCCATGTATTCTTGCTTATCCCTCATAATTTTCTACCAAAGTGCACTGTACATACCAAGTACTCAAATGTTTAAACATTTTTCTCACCTGCTGTCTGTAGCATTAATAAATAGGTAATACTTTGAGAGATTGCTAATGTGTAGGCTTGTCTTCTATAAAGTTAGAGAAGTTTGAAATTGTGGTTGGGGGCAAAGATAGAACTAATATTGTTTCTATGAAGAAGCCACAGCAGTACTTGTTGTGAAATTAAGTGTTATAAATTGATAGTAACAAATGTGGTGCTTCCCATATGGGAGTAAATCAGAATCCCCTGAGAACTTTTCAAAAGCATCTTACCCAGATCCAACCTCAGCCTACCAAATCAATGTCTATTCACTAAGATAGGGAGTAGATGTGCAATTTGAAAAAGCTTCCCAAGAAAATCCTACAACTTCTTGGTTCCTTCCCTCTGCTTCTTTCACAGGATTAGGCCAAAGTGAGAAAATTCAAGTTAGTATAATATTAATTACAGGTATACCTTAGAGATATTGCAGTTTTGGTTCCAGACCATTGCAATAAAGCAAATATCAAAATAAAGACAGTTACACAAACCTTTTGTTTCCCAGTGCATATAAAACATTTATATTATATTGTAATCTAGTAAGTGTGTAATACCATTATGGCTGAAAAATATACATATCTCAATTCAAAAAATATTTTAATGCTAAAAAATGCTAATGTTCATCTGAGCCTTCTGCAAGATGTGGTCTTTTTGCTGGTGGAGGGGCTAGCCTTGATATTGATGGCTGCTGATTGATCTGGGTAGTGGTTGCTCAAGGTTGGGGTGGCTGTGGCAACTTCTTAAAATATGACAATGAAGAGTTTGCTGCAACAATTGACTTTTCTTTTCACAAAAGATTTATCTGTAATGTGTGATGCTGTTTGATAGCATTTTACCCACAGTAGAACTTCTTTCAAAACTGGAGCTAATCTTCTCAAAACCTGCCACTGCTTTATCAACTAAATTTATGTAATCTTCTGAATTCTTTGTTGTCATTTCAACAGTGTTCACAGCATCTTCACCAAGAGTAGATTCCATCTCAAGAAACCACTTTGGTTGCTTGTCCAGAAGAAGCAACTCCTCATTCATCCAAGTTTTATCATGAGATTGCAGCAATTCAGTCACATCTTCAGAATGCCCTTGTAATTCTAATTCTCTTGCTATTTCTACCACATGTGCAGTGACTCCCTCCACTGAAGTATTGAACCCCTCAAACTCATTCATGAGAATTAGAATGAACTTCTTCCCAACTCCTGTTAATGTTAATATTCTGACCTCCTCCCGTGAATCACAAATGTTCTTAATGGCATCTAGAATGGTGAATCCTTTCCAGATGGTTTTAAATTTACTTTGCCCAGCTCCATCACAGGACTCACTATCTATGTCAGCAATAGCCTTATGAAATGTAAATTTCTTAAGTAATAGGCCTTAAAAGTCGAAATTACTCCCTGACTCATGGCTGTAGAATGGATGTTGTGTTAATAAGCATAAAAACAGCAATCAACTCCTTCTACATCTCCATCAGAGCACTTGAGTGACTAGGAGCATTGTCAATGGGCAATAATATTTTGGAGGAATCTTTTTTTCTGAGCAGTAAGTCTCAGCAGTGGGCTTCAAATATTTAATAAATCATGCTGCAGACAGATATGCTGTCCTCTAGCCTTTATAGTTCTACTTATAGAGCATAGGCAGAGTCAATTTAGCATAATACTTTGGGGCTCTACGATTTTCAGATTGATCAATGACCATTGGCTTCAACTTGATGTTACCAGCTGCATTAGTTCCTAACAAGAGTTAGCCTGAACTTTGATGCTTTGAAGCCAAGCATTGACTTCTATCTAGTTATGAAAGTCCTGGGTAACATCTTCTTCCAATAGAAAGCTGTTTCATTTTCAACACTGAAAATCTGTTGTTTAGTGCAGCCACCTTTACTAATTTTCTTAGCTGGATCTTTTGGATAACTTGCTGCAGCTCCTCCATCAGTACTTGGTGCTTCACCTAGCACTTTTCTGTTTTGAAGGTGGCTTCTTTTCTTAAGCCTCCTGAACCAATCTCTTCTAGCTTTAAACTTTTCTTTTGCAGCTTCCTCACCTCTCATCCTTCATAGAAATGAAGAGAGTTAGGGCCTTGCTCTAATTCAGGCTTTGGCTTAGGGGAATGTTGTGACCTAGTTGGTCTTTTATCCAGACCACTCAAATTTTCTGCATCTCAGCAATGAGGCTATTTTGCTGTCTTATCATTTGTGTCTTCACTGGAGTAGCACTTTGAATTTTTTTCAAAACTTTTTCTTTCCACTGTTCACAACTTGGCTGTTTGGCACAACAGGCCTAAACTTTGGCCTATCGTGGCTTTTGACTTGCCTTCCTCACCAGCTTAATCATTTTTGCTTTTGATTTAAAGTGAGAGACAGCGAATATTTCCTTTACTCGAACACTTAGTGTTCTTTGTAGGGCTATTAACTGACCTAATTTCAATAGTGCTGTGTCTCAGGGAATAGGAAATCCTGATGAAAGGGGAAGAAACAAGGGAACAGCTGGTCAGTGGAGGACTCAGAACACACACATTTATCGATTGTTTGCCATCTTATATGGGCATGGCTCATGGTGCCCCAAACTAGGGGTTCCCAATCCTTGGGCTGCAGACCAGTACTAGTCTGTGGCCTGTTAGAAACCAGGCCACATAGCAGGAGGTGAGCAGTGGGGGAGCAAACATTACCTCCTGAGCTCTGCCTCCTGTCACATCAGTGGGGGCATTAGATTCTCATAGGAGTGTGAACCCTACGGTGAACTGCGAAGGTGAGGGATCTAGGCTGCGGGCTCCTTGTAAGAATCTAATTCCTGATGATCTGAGGTGGAACAGTTTCATCTCGAAACCATTTCCCCCCACACACACCCCCCAGTATTGTCTTCTACAAAACCAGTCCCTGTTGCCAAAAAGGCTGGGGACTGCTGCCCTAAACAATTACAATAATGACATCAAATATCACTAATCACACATCATGGTAACTGATGTAATAATAATGAAAAAGTTTGAAATTTTGTGAGAATTACCAAAATGTGACACACAGACACAAAGTGAGCACGTTTTGAAAAAATTGTGATAATAGACTGGCTGGATGAAGGTTGCCACAGACCTTCAATTTATAAAAATGCAGTATCTGCAAAATACATTACAGCAGAGAAGAATAAAATAAGGCATATCTGTATGTGACCTTGACACAGTCATTTACTAGTTTCTGCCCCTAGTTCTCCCTTTAATCATTTCAGTATTCTCCAGAACACCTAGAGTAGTGCTCCCCAACCTTTTTGGAGCCAGGGACTGGTTTTGCGGAACGCCAATTTTTCCACTGATGGGGGTGGGGGATGGGGATGGTGTGGGGATAAAACTGTCCCACCTCAGATCATGAGGCATTAGATTCTCATAAGGAGGGATAACCTATATCTCCCACATGTGCAATTCACAATAAGGTTCACTATACCATGAGAATCCAGTGCCTCCACTAACCTGACTGGAGGCAGAGCTCTGGCGGTAATGCTGGCTTACCCACTACTCACCTCCTGCTGTGTGGCCTAGTTCCTGACAAGCCATGGACCAGCACTGGTCCCTGGCCTGGAGGTGGGGGGGGGGGGGGTTGGGGACCCCTGACTTAACAAAATTAGATCATCAATAAGACACTTTTCTTTCCAAATGGAAAACAACTCCCTTCTATTAAAAATACTAGTTGTTTGGAATAATGTGTTTTATACTAGTTTTTTTAGCACTGTGCTATTTCTATATGAGACACAAAATAAGTATTAGCTAATGAATATGATTTTAAAGATTATAAATAATAAATTCACTCAGTACTCAGTACCTTCCATATGACTCAAGTCTCCTAAACATAGATACGCAATAAATAATAAACATCTACCTGGTAGAAAGTTTTACAAAGTAAACTGTGCCTTTGTGAAAGTGAAGTATTTCGCAAGGTAAAATATGCATATATATGAAAATATATTAATCTTTTACACAAATTAGGCCCATCACTATGTGACCTATGAAACATTAATAGAATGTTAATAGAATTAGGCCTTAGCTTAAGGGAACTTAATTAATAGAATGTTAATCTCCAGAAGTCTGGAGGTAGATGCATGCAAGAGAGAGAGAGACTGTTCTAAACACAGTTTAGAATTAGGCATTTTACAAGTTTAAGTTGGCTAGTCTTTCTGCAAGCATTTAATAGTCTTTGGTGGAAGAAAATGAAAAGCTCAGCTTGGCATATTTCATTATTCAAAATGTGACCTGATGGTGTTCTTTTCTGATATCATTCCTCACAG
Seq C2 exon
GTCTTTCACTTCTGCTTTTCTCTTCTCCATTGAAGTTCAAGTTACCATTGGGTTTGGAGGGAGGATGATGACAGAGGAATGCCCTTTGGCCATCACGGTTTTGATTCTCCAGAATATTGTGGGTTTGATCATCAATGCAGTCATGTTAGGCTGCATTTTCATGAAAACAGCTCAGGCTCACAGAAGGGCAGAAACTTTGATTTTCAGCCGCCATGCTGTGATTGCCGTCCGAAATGGCAAGCTGTGCTTCATGTTCCGAGTGGGTGACCTGAGGAAAAGCATGATCATTAGTGCCTCTGTGCGCATCCAGGTGGTCAAGAAAACAACTACACCTGAAGGGGAGGTGGTTCCTATTCACCAACTGGACATTCCTGTTGATAACCCAATCGAGAGCAATAACATTTTTCTGGTGGCCCCTTTGATCATCTGCCACGTGATTGACAAGCGCAGTCCCCTGTATGACATCTCAGCAACTGACCTGGCCAACCAAGACTTGGAGGTCATAGTTATTCTGGAAGGAGTGGTTGAAACTACTGGCATCACCACACAAGCACGAACCTCCTACATTGCTGAGGAGATCCAATGGGGCCACCGCTTTGTGTCCATTGTGACTGAGGAAGAAGGAGTGTATTCTGTGGATTACTCCAAATTTGGCAACACTGTTAAAGTAGCTGCTCCACGGTGCAGTGCCCGAGAGCTGGATGAGAAACCTTCCATCCTTATTCAGACCCTCCAAAAGAGTGAACTGTCTCATCAAAATTCTCTGAGGAAGCGCAACTCCATGAGAAGAAACAATTCCATGAGGAGGAACAATTCTATCCGAAGGAACAATTCTTCCCTCATGGTACCAAAGGTGCAATTTATGACTCCAGAAGGAAATCAAAACACATCGGAATCATGACAGCAAGATAACCCCAAGACAGTCTTTTATCAAGTTTTGACGGTTTATGCTGGGCACTGCCAGACTGAACCAGAGCTGGAACACAATAATGTGTCCTTCTACATTTTATTACACTAAATGATATTCATATTCAAGCAACAGCACTTTCTGTAGTAATAAAAAGTAACACACCAAGTGGAGGATTCATGGCTTATGCTTGTTTCATACATGTAGAATTCGCAGTGATATACTTAAGTTATGTGCAGGGGTGGGTATGCTCGTTTCTCTCAATTTGAAACACAAGAATTACACTAATAGTAACAGGCCTTGAGCACAAAATTTGGTCAAGAAATGAGTCTGTTTGAAATGCTTAGTTGGTGAAACCCAGATCGCTGTGTTACTAATGATCACTCTGGAAATGCAAATAGAATAGGAGGGGAAAAAACAAAATCATGTTAATGCGTTTTGTACATCAGCCTTCTCCTGTCTCCATGATAACTGCATTTGGTAGGAAGCCTGAGGCAAAAACTGCTTAAGTGGATCTGTTTGTAAGTGGATTCAGTTCATTCGCTTTGTCTGTCGGTGACTCCTGAAGGTTTCCTGGTCCATCTCATTGCGGCCTGTTGGGCAGAGCTGGACAAGGTGTCTTTGAAGGAAAGCTAAGTCTTGTCTCATTTAGGACTGGGTTCCCCACAGTGACAGTCACTTCCTTCAGCATCTCACTTCTTCTTCTAGAATCCCCACAGGGAAATACTGTATTGAATATTTTATTAAAACATTTTCTTTGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121361-KCNJ8:NM_004982:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.170
Domain overlap (PFAM):
C1:
PF0100715=IRK=PU(25.6=70.4)
A:
NA
C2:
PF0100715=IRK=PD(74.1=84.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)