GgaINT0119910 @ galGal3
Intron Retention
Gene
ENSGALG00000013251 | F1NK63_CHICK
Description
NA
Coordinates
chr1:69127480-69132455:+
Coord C1 exon
chr1:69127480-69127915
Coord A exon
chr1:69127916-69131554
Coord C2 exon
chr1:69131555-69132455
Length
3639 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
TGCACAATCTTCCTCTCCAGGTC
3' ss Score
10.99
Exon sequences
Seq C1 exon
CCCCACGGAGACACACCGCGGGGAGCAGCCCCCGTCTCGCATCTCGCTAGGTGGACTATGGTGGCAGGAAGATGTTGGCTCGGAAGAGTATCATCCCTGAGGAGTATGTGCTGGCACGGATCGCTGCCGAGAACCTGCGCAAGCCGCGCATCCGGGACCGGCCGCGCAAAGCCCGCTTCATCGCCAAGAACGGAGCATGCAACCTGGCCCACAAGAACATCCGTGAGCAGGGGCGATTCCTGCAAGACATCTTCACCACCTTGGTGGACCTGAAATGGCGTCACACGCTGGTCATCTTCACCATGTCCTTCCTGTGCAGCTGGCTGCTCTTCGCCATGATGTGGTGGCTGGTGGCTTTCGCCCACGGCGACATGGACCCGAGCACAGAGAACACTGCAAACAACACCAAGTGGACTCCGTGCGTGACATGTGTCAG
Seq A exon
GTACAGCGCAGTCGGGGGGACAGAGAAAGGAGGGGGACACGGCTGCCTGCTGCCCCGTCGATGACCGAAATGCAGTTTTTGGTTTACGTGAACCATTATGTTTGGTTGAGACAATTGAAAAGCGCGGTGTTTTCCTCTAGATTACGTAAATTCAGCAAGCCTTCTGGGCTTGGAAAATGCTGTACTGTAGATTTCTTTGATTCCTTACAGGATCTGAAAGAGAGGGAGACCTGCTGCTTTTCATGTGTCTCCACACTCTGTGGGTGACATACCTTGCCTGTCAAGATAAGAGCCTGCTACAAGAGTGGGTATGTGTTACACGTATCGTAATGTTGTCTGTGGCAGCAGGAGCATCCCGAGCGTGGTGCGAGCTGTGAGCCGCGCTGGTGGAAGTTGGCCCATCCCAAAAGCGGTGCCTGGGAGGCAGGCACCCACCATAGGTGTCAGCTGGCAAGAAAGGTGCTGCTTAGGGCAAAAGGAGATGTGCTTCAGGCTGACACTTACGAGACGGCTCCAAAATGCGTGGTCTTTGATGAGGCCAGCAGTTTGACGGACGAACTGCTTCCATGATGTGCATGATTTATCATATAGTGAAAGCTTTAGGGACTTCTGGGTTAAACGTCCGCTGTTAAGAAAAGTATTTTCCTCTCTGTCCCCAAATGACAATTTTCAAGGCTCTGGCAAACTAACGCGTAACTACGCAGGACAGGGGGAGCATTTGTTAATGGGAGATGAGGGTAAGCAATAAGATCACTCTGTCATCTCATCGGTAACACATCTTTTTATAGCAGCAGGTGCTTTTAAGCAGGACAGTCTGGGTTCAGGGTGGCCAGGCTGCCCTATAGCAGCTGCCTTGACACACTGCAGTAACTGTGTGAGGGGCTGAGAGTTCCTGCTTCTCTTAACTTTCTGTTGCAGACAGTTTTTGAGGCACCTCAGCAAGCTTGAAGGCACCTCAGATCCGACTCGTGAGGCAATGGAGATTTCATTCTCCTTATTCTTATTTGTATTTTTATTTTATTATAATTATTATTATTTTGACACTGTTTTGCTAAATGGGAAATTTCCAAGGGGAAGAGAAAACAGAGATTTTCCAAGCTGACCTTCATCAAGCTGGGGATCTGGAGCAGTGGGAGGTGGCTGTCTTATTTCCTTTCCATTAAGTGGTCGGAAACAGTTGCCTCTGACATGAGACATCATGATCCAGCTGGCGCGCACTGGGGATGTCCTCCAGGGTGTCACCCCCTGCCTTTCTGGTGTACTGCTCCCAGAGGGAAGCACGTGTGAGATATATCCAACCCCACCAACTTTCTGGGGTCCCCTGGGAGGATGTCACCCTACTTGGTGGAGGCCCCCTCAACGTGTATCCCCATGGTGCTCCTGGGCCACTGCACAGAGCCTGGTCTGAGGGCTGAGGCCACCATGCCACCAGGACAAAGCAGAGCCATGGCCCCTCGCTATCTCCCTGTAGCCCCAAATGCAGCATCCTGTGCCAGCAGTGTCCTCCCTGCCACAGAGACTGTCTGAAGGCTGGCAATTAGCAGAGCCAATGAACCTGTGTGCCTCTGAGCTTTAGCCCTTGGCAAACAACACCTGTCACACTCTCCAGTGAGTACCTGAGGTGTTTCAGCCAACAGCTGCCTATGTATCCAGGGAAAATCTTTTCCCTACATCTTTTTAAATCTGGCCACCACCTTGGACACAATATGAAATAATACAATCCGAAATAACAGTACGATTGCTGATATTTTTAAGAGTAGCGAGTTGCTGGATTTAAAATGTACTTCATATTGCGTATATAGCAATTCACATATAATATTAATATCATATCTGTCACAATAGTGGCAAATATTTTTTTAATTTACTTTCCTGAGATTTAGGCCCACAGATATTTCAGGAGAGCTTTTTTTGGATGGGTGCCATTACAAATGTATAGGGAAATCTGGCTTTAGGAGATTTTTACCACTGCTACAGGGAACTTGCACAGCACTTCAATTTTTCAAAGTACTGCAGAATTTCTAAGGCTAGGAGCACTTTTGCCACACAAAGCAGATGTTATCCAAAGAGAAAAACTGTTGCAGAGCTCAAAAGTGAGAGACCTGGGAGTAGTGTGGTTTGACATTCATGGCTCCATCTTCACTTGTTCACCATGCTGTACAAACTTGTTGCTTCTGATACTGACACTCTAAAAAGGTGGGTTTTTTCCTTTTTTTTTAATGATGACTATCAAAGGGAATCAGAATATTTAATTGCACAGAGCTTTAAGTTAAATTAAATTAAGGTTTAGCTGGAAGTTTTATTCTGCATGTAGATGACTACTCAATAACATAGAAATCATTCCATGAATGAATGAACTCCTTCAACCCTGATTTCTTCTTGTATAAAATACAAGAATAAACTCCTCAGTGTGAAAGAATCTGCCAAAGATTAACAAAACAGAAAAGAAAAAAAGAGATTAGGTTCTTTCAAAGATGTCTGTGCAGAGACTGGCTTGTTTTCTGAAAGATGACCTACAGAACATTATCCCTGATATTGCCTGTTCTATTTTAATGTCTCTTCTTGATCCCAGGCCTTAGAACCATCTTCATAGAGAAGATTTATGTTTTCCATAGGTAAAGCCATACTGAGCATGGGGATGCTTCAAATGTTGGTGGATTGCACTGTGTCAAAAGGGTCACTATGTTAGTTCATGAGACCCTGTGTGCAAAATATCTACTGCATAAACCCCAAGGTACAGGTTTGGGGTATGAGAGACTTTGGTGAAGGAAGAGTCATTTTATAAAAGGAAATGAAATAACCTGGTGCTTATTTGAGAAGTGATGTTGTGCACTATTGCAAATAACATGTTTTGAAAAGTTTGCAGACAGCATCCTCTGATGTCCAACAGTACAGCATATTAGAGATACACTTCTACAACCCACTGCTGTGTTGAAGTTCTCCAGCTAGCCTTGCCATGGCAGTGAGCTAAACCCAAACCCTGGGCACAGCATTGTCCTTCAGCTGGGATGTGTCCTCCCTCTGCAACCTGATTCCATGGGCTCAGGTGCAAGGCATGCAAGGGTCCGGGAGGTGTGATAAAGCTGAGAGTATCCCCTTTCCCTCCAGGAAAACTTGCTAAAGGAGCTAATGACAAAGAGAGTCAGGTTTTGAAAATGAAGTCCTGCAGCTTTCCCAGTTTCCTTTCCCTGTGCAGGCTGGTGGGAGAACCCCAGTGTGCCAGCCAAGTTGCTCACCTGTCTCCAAATGCACCACTCCCTGCCAAGAGCTTCATGGGATGTAGAAGGTGGAAAGTCATGCTGGGAGTTAAAGCACTGTCAGCTAACATGGTGTGCCACATTTATCTGAACAGGGAATCTAGTGAGCTTCTCAGGGTCATACAGAATTACAAATGGTCTTTTAGGAGCTCAGGCTCTCACGTTTTCCCTCTCAACATTATATGCATCACTGATCATACAAACACTGAATCACCAAATTCATGGTGATTCAGTGTTTGTTAACATGCAATGTTAACAGAACGCTTAAATTTACAAGAACTGCAGAAATAGACACTTAAGTTTGTTTCTACTAAGCATATGCTAATAGCTAATCAGTTTATGTTTGATGAGCTTTGAGTTAACTCTGCACAATCTTCCTCTCCAG
Seq C2 exon
GTCTTTCACCTCTGCTTTCCTCTTCTCCATTGAAGTTCAGGTGACCATTGGTTTTGGGGGCAGGATGATGACAGAGGAATGTCCCTTGGCCATCACGGTCTTGATCCTACAGAACATTGTGGGTCTAATAATCAATGCTGTCATGTTGGGCTGCATCTTCATGAAAACCGCTCAAGCTCACAGGCGGGCAGAGACCTTGATTTTCAGCCGGCAGGCGGTCATTGCCGTTCGAAATGGCAAACTTTGCTTCATGTTTCGAGTGGGAGACCTGAGGAAGAGCATGATCATTAGTGCCTCTGTGAGAATCCAGGTTGTGAGGAAGACTACAACCCCTGAGGGAGAAGTCATACCCATTCACCAAGTAGATATCCCCGTAGATAACCCCATTGAAAGTAACAATATTTTCCTGGTGGCTCCCTTAATCATTTGTCACGTCATAGACAAGCGCAGTCCTCTTTATGATATCTCTGCTGCTGACCTGGCGCTCCAGGATCTGGAGCTCATAGTGATACTTGAAGGAGTCGTGGAGACGACTGGCATCACAACGCAGGCGAGAACCTCCTACATAGCAGAGGAGATCCTGTGGGGTCACCGCTTTGTGCCCATCGTCACTGAAGAGGAAGGTGTTTACGCCGTTGACTACTCCAAATTTGGCAACACAGTGAAAGTGGCAGCGCCGCGTTGCAGCGCACGAGAGCTTGACGAAAAGCCCTCAATTCTCATCCAGACCCTGCAGAAAAGCGAGCTGTCCCACCAGAACTCCCTGCGAAAACGCAACTCCATGAGGAGAAACAACTCCATTCGGAGGAGCAACTCCATGAGGAGAACCAACCCGTCCCTCATGGTGCCCAAAGTGCAGTTCATCACACCCGAGGGGAGCCAGAGTGCCTCCGAAACGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013251:ENSGALT00000021634:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.154
Domain overlap (PFAM):
C1:
PF0100715=IRK=PU(24.9=69.7)
A:
NA
C2:
PF0100715=IRK=PD(74.8=84.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]