MmuINT0085612 @ mm10
Intron Retention
Gene
ENSMUSG00000030247 | Kcnj8
Description
potassium inwardly-rectifying channel, subfamily J, member 8 [Source:MGI Symbol;Acc:MGI:1100508]
Coordinates
chr6:142564837-142570453:-
Coord C1 exon
chr6:142570006-142570453
Coord A exon
chr6:142566506-142570005
Coord C2 exon
chr6:142564837-142566505
Length
3500 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TCTGATATTGGTCCTTACAGGTC
3' ss Score
9.29
Exon sequences
Seq C1 exon
TCTAGGAGGACGCGTGTGGAGGAAAGGAGCCACAGGTTCAGGCAGGTGCATAGGCGGGCTATGGTGAAAGGAAGATGTTGGCCAGGAAGAGCATCATCCCGGAGGAGTATGTGCTGGCGCGCATCGCAGCGGAGAACCTGCGCAAACCGCGCATCCGCGACCGTCTCCCCAAAGCCCGCTTCATCGCCAAGAGCGGAGCCTGCAACCTGGCACACAAGAACATCCGAGAGCAAGGTCGCTTCCTGCAGGACATCTTCACCACCTTGGTAGACCTGAAGTGGCGTCACACGCTGGTCATCTTCACCATGTCCTTCCTCTGCAGCTGGCTGCTCTTCGCTATCATGTGGTGGCTGGTGGCCTTCGCCCACGGGGACATCTATGCTTACATGGAGAAAGGCACCATGGAGAAGAGTGGCCTGGAGTCCGCTGTCTGTGTGACCAATGTCAG
Seq A exon
GTAAGAATGAAATGGAGTTACCAGCAAAGTAGAAATAAAAAGCTCTTTCAGCTAGTCGATTGTGAAATAAAGGGTCTTCATTGGGCAGTTCAGAAACAAAAAGCAAATACAGGGTGCAGGGTTGAAGTTAGCACATTAAAGTCTTTGTAAATGTAGTTTTACCAACAGGTTTCTGAGAATGTGCGACTGCTTCTTTGTGCTGACCTTGGATGGGTTCAAAGAATTCCTGACTCCCCCCCCCCCAACAACAACAACAAACAACAACAACAAAAAAAAAAAACCACAGTTCGTTTTCACCACAAGGATGTCCAGTGTGCACCAGGAAATATTCCCAGTCCATCCAAAGCACTGTGCAAATACAAGAAATATTTTTTTTCTGTAAAGCAGTCTTAATTTTAAAATACACTAAAAATAAAATAACAGAAGTAAATAAAAGCCCTTCTTTATCAAGGTTATTTTGGCATCTCTGACAGATTTTTTTAGATTTAAAAAAATTAAAGCTTATTCTAAAATTTAGAAGAGAGAGTTGTAGTGAAAATTAGTCCAGATTTTCACAAACGGGGTTGAATAGACAGCAAGTGGATATTGAGGTCTCTTTCCAAAGCTTCCACAGAGCAGGAACAAGGCAGCTTTTAGGTTATCTAAATTTGACTTCTGCATTTAGGGATGCTTCAAAGTCAGCTAACACGCACTGGGGTTCCACGTCTCTCTTCTCTATTCCCAAGAGGCCCCAAACACTGCAATGGGGCAAACTTTTTAGTTTGTTTCTTTGGGTGGAGACATAATTGCTAAGGCAGAGAGACTGAGGGCGCTCCAGCCAGGCAGGAAAGGACTTCCAGCGGTCCTGGATCCTATAAAAGTAGCAGAGCATGGCATAGACACCCATAGCTGGGAGCAGAGCTCCTCATGATCTTACTTGCCCTTCCACTTGGCCAAGTAATTGCCAGGCCGACATGTCAAAGAGAGACATCACCTTAGACCACACACAGATTCCAGCTCAGATTTGTCATGAGAGCAATGTACTAGAAAGACCTGGGCTTTACCACTGGGCAGATAGGATTTTCTTTATTCAAGCTTTTGCCTCAACAACAATGAGAATAAGAACCCCAGGTGAGCAGACAACTAGGGACATGGAGAACAAAGTCCTCTCTGTGTTTAAATATTTCGGCTGTGTTTAAGAGATTTGATGCTGTAATGCTGAGTCTCTCTCATGGACTTACTGGCCTTGACTTGGCTGCTGAGGGCATTCATATTCAAACAAGGTTCCAGCAAACGGGAAAGAAAAAAGGTCCTGACAAAGAGAAGTAGGAAAAACGATCATGACAACCTTGAAAATAAACTAATTTTACTCAAGATGATCTATTGTCACTACCCATGAAAAATAACTTAGTAGATTTAAATATATATCATCAAAAAGGGATTATTCTTCCTAGGATGTCTTCTAGGAAGAGAATTCTATAGCATTCACTGGTCCCTAAAATCTGCTTCTTATGACTTCTTATCAAGCAAGATATTCTGAAGAGCATTTACTTCCTACATGCATTCCTAATGGTGTTGAGAGGTGAGAAATGGTGTCAACATTACAGTGAAGCAGCGGTGACTTTCTCAACAGCGCCAGCTTTTAAATCTCGCTCCTTAGCATATTTAAAGCTCATTCTCTTCCTAGAGAACTTTAAACATGCACAATTCCAACTGTTTACATTGCCAATTTGTTGTCAGGCAGCTTTGGTGTCAGGCAAATCATCAGATTCGGAAGCACCTTCCTCTCAGAGGCTGTCCACCAGTATTTCCAACATCCCTTGGTTGCTCTTACTTTAGGGTGGCTCACTTTCTCCTTTGTGCAAAGATGACTTTCCAAAGTGAGTCCGAAAATAGAAACTATGTTATTTTATGTTATTTTTCTCATTATTGTTCAGCTGATACCAGGCCCTCAGCCCTGCTCTATTGAAGGCTTTTTTTTTTTCACTTGAGATTTTTTTAGCAAGCGAGGTGTCCAGATAAGATTGGCTCTTATATTAGATAGAGAAATTGAATTCCATTTTAAAATAAACAATATGAAAACACAGTGCATGAACCGTCTCCCAAGCCATGGACAGACATTGGACTCTTCTCTCACATACAAACCAACATTAAAGCTCCATGTTATATGTGTGCCCTCTTCTGAGATCCATTTCTACTGTCTGTGCTATTGTCAGTCCATGCCACATATCTCGAAGTGTGTGGGTAGGGCAGAAGTCAGTTCTTACAGTTTTGCACAAACGCTTTTTCAGAGATAAAAGGCTCCTTTCCTACCCCCACTTGAAAGCTGATGGATGTGTACAGACTCACGCTCCTGGCTTCCTGCCAGAGGGCAGCGTGTATTGAGTGCTCAAAGTTCAAATGTTTTGTTCACTCATTGTGCCTGGCATTCATAGATAATATTTTGACAGACTGTAACATCTGGTTTCTCTCCTATGAAGTTAAAGAAGTGTGGAATTGGGGTTGAGTGTCAGGAATTGGGTCTGTGATGAAGTGCCAGCAATACTGGGTATGCAATCAGGCGAAGAATTTGCTAATAACAAAATGTGATTCTTCTCAGCCAGAGATTAGCAGAATTACCCAGGAGACTTTCTGAGACTCACTCAGGTCCAGGAGGAGTCCCCCCCCCCCCCAAACCCTTGTCTAATCGCTAAGATGGGAAGGGGATGTGCGACCACAAAACACCTTCCCAGGAAAATCCTGACACCGGCTGACTCTTTCCCCTTGCTCCTTTGAGAGCAGCAGGCCAGATCTAACAGGACTCATGGATGGAGTCATTACACAGACATAGTCTTGACAGAGTCACTTAGTAACCAACACTTGAAACTCCTTTAATAGTTTCCAAGTTCTCTGGGTCACATAGAAAACAAGATAATCAACCAAAAATTTCTCTTCTCCAAATGGAGAAATAACTCTCCTTATTAAAATACTGATGTTTTCTGGATGGTGTGTTTTATACCATGTTTTACCACTGTACTAAGTTTTGTAATCAGGACAATCAATCACTGGATAATGGCTATAATTCTAGAAGCTATAAATAATAAAACATTCAGCACTCAGTAGCTTCCACATGACTCAAGTCTCTCAAACACAGGTAGGTAATAAATAACAAACACCTGCCTGGTAGAAAATTCCAGAAAGTAAGTTAGGCTTTGGTAAAAATGATATATACTACAATTTATATTTAGTTGTTTATTTATGAATGTTTTCACACGGTATATGATCTAGGAAACATTAGTGAAATCGTATCCCCAAATCTGGAAGTACATACATAGGTACAAACGGAAAAGGAAGAGGAGTGGGGTGGGGGAGGCTATCAGGAGGTAGTGAGGGGGTGGGGGAGAGAGGAGCAGGGAGGATGCTTGTATTTAAAATTAGTCTTTCCGGAATCGCTAGGCTGTAGTAGTAGGCACTGCTCTTCCTGGGCTCTTTTCATCACGCACTCGCTGACCTGACATCATTTCTGATATTGGTCCTTACAG
Seq C2 exon
GTCATTCACGTCTGCGTTTCTCTTCTCCATTGAGGTTCAAGTGACCATTGGGTTTGGAGGGAGAATGATGACTGAGGAATGCCCTCTGGCCATCACGGTTTTGATTCTGCAGAACATCGTGGGTCTGATCATCAACGCAGTCATGTTGGGCTGCATCTTCATGAAGACGGCGCAGGCCCACAGAAGGGCAGAGACGCTGATTTTCAGCCGCCATGCTGTGATTGCCGTCCGCAATGGCAAGCTGTGCTTCATGTTCCGGGTGGGTGACCTGAGGAAGAGCATGATCATTAGCGCCTCGGTGCGCATCCAGGTGGTCAAGAAAACCACGACGCCAGAAGGGGAGGTGGTGCCTATTCATCAGCAGGACATTCCTGTTGATAATCCCATCGAGAGCAATAATATCTTCCTAGTGGCCCCATTGATCATCTGCCACGTGATTGACAAGCGTAGCCCCCTGTATGATATCTCAGCAACTGACCTTGCCAATCAAGACCTGGAGGTCATAGTGATTCTCGAGGGCGTGGTAGAAACCACAGGCATCACCACACAAGCACGGACCTCCTACATTGCCGAGGAGATCCAGTGGGGACACCGCTTCGTGTCAATTGTGACTGAGGAGGAGGGCGTGTACTCTGTGGACTATTCCAAATTTGGTAACACGGTGAGAGTGGCTGCGCCAAGATGCAGTGCCCGGGAGCTGGATGAGAAGCCTTCCATCCTGATTCAGACCCTCCAAAAGAGCGAACTGTCGCACCAGAATTCTCTGCGGAAGCGCAACTCCATGAGGAGAAACAACTCCATGAGGAGAAACAACTCCATCAGGAGGAATAACTCTTCCCTCATGGTGCCCAAGGTGCAGTTCATGACTCCAGAAGGAAACCAGTGTCCATCAGAATCATGAGGGCAGGATGACCGGAGACAGTTACTTGTTGAGTCCTGATGACTGATAGCCCTGAACAGTCACTGTGTCCTGATGACTGAGAGACAATCCGGAGACAGTTCATTGAGTTCCGATGATCAAAATATTGCACTCATCACCAGTTCAGGGCTGGAGCACAGTATTCCTATCCTAATGCACTGAGAAATATTAATATTTGAGACATTAAACTTCCTGTATTAATAAACAATAACACACAAACCTGAGCTCTTTATTCTCCTCTCATCTTAAAATTCTGTTTTCTTCCCAGCAGTCTCTGTAGTCAGGTCAGTTGGCCTGTGTTTTTGAGCTTCTGTCACTTAGCAGAGATGAGATCTTCTACCCAAGCCCAGTTTCGTCATTCTTAGGTCCTGCACCCTCAAGTAAGGGCAGAGTAGAGAGACGTCCTGGGTTAACACGGTGTGTGATGTGGGGTTAACCCAGTGTGTGATATGGGGGTAACACGTTGTGTGATGCGGTAAAACATGGAAGCTGGGCAGCTGGGTAGCCTTTTATTCAGAGTCTGGGGCTTGAATTCATTTCTTACATGAGCCATTGAACCACACGGGTCATCATGAATATGTTCAAATCTAACCTTCAAAGACTCAGGTTGCTAACCAAGCAAATAGCACCTGCTGGGTTAATTATTCCTAAAAAAAAAAAAAAAAAATGTCTGACTTGGAACTCCAGACTCAAAGATCAAACAGGTACCTGAAGCCCTGCTTGCCTGTTTAATAAAATACTCAAAACCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030247:ENSMUST00000203945:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.177
Domain overlap (PFAM):
C1:
PF0100715=IRK=PU(97.8=70.4)
A:
NA
C2:
PF0100715=IRK=PD(74.1=84.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types