BtaINT0079677 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002551 | KCNJ8
Description
Bos taurus potassium inwardly-rectifying channel, subfamily J, member 8 (KCNJ8), mRNA. [Source:RefSeq mRNA;Acc:NM_001040482]
Coordinates
chr5:88853317-88860007:+
Coord C1 exon
chr5:88853317-88853757
Coord A exon
chr5:88853758-88858938
Coord C2 exon
chr5:88858939-88860007
Length
5181 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TCTGATCTCATTCCTTACAGGTC
3' ss Score
11.4
Exon sequences
Seq C1 exon
GACGGGTCTCGAGGGAAGGAGAGGCAGGTCGCAGACAGGTGCCTAGGCTGGCTATGGTGACGGGACGATGTTGGCCAGGAAGAGCATCATCCCCGAGGAGTATGTGCTGGCGCGCATAGCGGCGGAGAACCTGCGCAAACCGCGCATCCGGGACCGCCTCCCCAAGGCCCGCTTCATCGCCAAGAGCGGGGCTTGCAACCTGGCGCACAAGAACATCCGGGAGCAAGGACGGTTTCTCCAGGACATCTTCACCACCTTGGTGGACCTGAAATGGCGCCACACCCTGGTCATCTTTACCATGTCGTTCCTCTGCAGCTGGCTGCTCTTCGCCATCATGTGGTGGCTGGTGGCCTTTGCCCACGGGGACATCTATGCTTACATGGAGAAAAGCGGGATGGAGAAAAGTGGCTTGGAGTCCACCGTGTGTGTGACTAACGTCAG
Seq A exon
GTAAGAAGGCGTCGGGCTGAGGCGGGGTGGAAGGCAGTACAGAAAAATAGATGAAATTGCCCTTTCTGTCTTCTCTTTGTTTTGTTGACAGTGAACTAAAGACTTTATTTTAGTATGTTCAGAAACAAAAAAATAAAAACATAACAAAACAAAAACCGAATCTGATGTATTAAAATTTTGGGGGGGTGCAGCCTTGGATGAGGAGGCTTTGAAAATGTAGTTTCAATTCCTTGGGCTAGCCTTGAAAATATTATACTGGTTATTTAAAAAGGATTTCACTGAGTGCCTTCCTCAAAAAAAAAAAAAAGCACACATTTAGTTGTCCATCTGAAAAGCTGCTGTCCATAGTTCCAGTATCCAAAAGGAAATATCTCTGATCAACAAAAAATGTTGTGCAAATGCTAGTAATGTTCCATGACTTCTCTTCCCATGACATTTTCAGAAATAATGAAAAAAATTAGGAAAACACTGGTGGAGAGGGGATCTAAATTTAAAAAATAAATCTACCAGAAATGAAATAAATATTAAGCCCTTCTTTATCAAGATGATCTTGAATAGCTGATTGCCTGCTTTAATTCCAAAATTAAAAGTTACGTTAACATTCGGAACTAGAAAAAAGCTGATCTTTGATAGAAATTGGTGCAAATGTTTGATGGAAGAGATTACGTAGAAGTGATTCAACATTGTGGTTTTCTCTAAAAGTTTTAGTGGGATAGGAAGGCAGTTCTTAGATTGCCCTGATTTTTTTTTCTTACATCATAAATATTTCAAAGATAAGTGAATTTGGTTTCAGTGATTCTCTTCTCATATTTTCACATGGCCTAAGAACATTTACTTGGGGGTGATTTGTCTCTTAATTTTTTTGTTTAAAGATGGAAAAAGATAACATCAATTGCAAAAATATTCTTCCTGCATAGAAATATTTGTAATAATACTAGCAATTTTTCCAGGACATTTTTTGAATAATATCCCAAATTCACAGAATTCATAAAACAAAGGAACTTGAACAGGCACCGTTCTGTCAGGAAACTGGAAAGAATAAAACCTTTGCTGATCCTGAAATGTGAAATTAGCATACCATTGCAAGAAGCAGAAACCCAGCCTGTACACTTGCCCATTCTTCCCTTCCCTGACTAGTTGCGATGCCAGGTTATCAAAATGGGCATGTAATATTTGTCACAGAGATCACATACCACAGATTTCAGCTCAAATTTTGAGGAGAGCCAAATTGAATTGATCCATTGCCTTTACCATCGAGTTAGATAATATTTTCTTGACTTAAACTTGTCACAAACTATTGTCTCAAAGAAAATACAGGGAAAGAAATGTATGTGATCATCAGTATACCAAATATAAAGGAAACAAGATACTATGTTTAACAGATATGTATAGGTCAGATATCATTATAATATTTCTCTTTAAGAAATTTATTGGCACTGCTATGGTGAATCATTTTCCTATCGAGGTACACTTTTAATAAACTTGAAGTAGACCCACATAAAATGAGATAAAAGAAACAGACATAATAAACCTTGAAAAATAAATGACAGATTTTATTCACAAGATGAAAATACTGGCTTTCCTTGTGGAAAAACTCATTAGGCAATTGATTAAAGGTATGTCATTACAAGGGAGATATTTTCAGTGATTTTGTAAAATAACTTGACAGAGTGCTCTGGTTATTAAAAGCTGTTTTACTGCTAGCTTTTATTGTTCAACAAGAGGTGTTTTGAGGTATGTTCATTCTTCTGATGGATTCCTGCTGGTGTGAACATTCAATTCACTGTGAGAAATAGTGTTGCAGATACAATGAAAGAAACTTGATTTTAGCAGTGTGACAATTTTAGCATTTTATTTATTCATTTTTAATTAGATGACTATCTAAACATTTTTAAACTTTTTATTGAAGTTGATTTAACTTTAACATTTTAAATTTTACTTCTTACCTAAAAAATATTATTGAACATCTTTTAATGTTAAAAATCTTACTGGTTTTATTTTAATATTGTGGTACTATGTATACTTCAGTGCAATAAAAATTTTAATCATAACCAACTGTACATAATACTTTTTCACCAAAAAAAGTAGAAACAGAAAAATTTCTATTTTTTCCCCAAAGGATATTTAAAACATGACTAATAATATGTCTAATTTGTTTGCATTTCCTTTCCTTTCATAAGTTCAGTGTCCCACCTTGTCATCAAAACTGAAAATAACTTATTATAATGAACATTTTCTAGTGTATCCAAATAATATTTAACATTTCTCCTTCTAGGATGGTTCACCTTCCCTTTCATGTAATGACTTTCTAACATTAGTCAGAAAGTAAACCAACGTATTTCTTCTTCTTATTCAACCTAACTCCCTCTGTAGCAGAACAAACCAGAAGCTAAACACTTCCATCTCTTGAGGTTGTTTAGCACAACAGGTGTTCATTAAAAGGCTGAGTCTTGCACCATATAATGTTTGGAAGCAAGTTCTTTCATAAATAAATAACATACACAAATCGCATATGAATAGTCTCTTAAGCCATTAAAATGAAACATCTGGGCATATCACTGCTCCCTGAAGCATGTATGTTTGTTTAGTTGCTAAGTCGTGTCTGACTCTTTTGTGACCCTCATGGACTACAGCCTGTCAGGCTCCCCTGTTCATGGGATTTCCCAGGCAAGAATACTGGAGTGGGTTGCTGTTTCCTACTTCAGGTTGTTATTTCCTACTTCCTGACCCAGGGATCGAACCTGCATCTCCTGCAATGGCAGACAGATTCTTTACCACCGAGCCACTGGGAAAGCCTGAAGTATGTATTAAGTGAAAGTGAAGTCGCTCAGTCGTGTCCTACTCTTTGCGACCCCATGGACTGTAGCTTACCAGGCTTCTCAGTCCATGGGGTTTTCCAGGCAAGAGTACTGGAGTGGGGTGCCTGCCTTCTCCAGGGGATCGAAGTATGTATACATTATCAGAAATCAGTGTTGTGTCCGTGCCCCTTCTCTGGGGTCTCTTCTTATTCTTTGCCATGGTTTTGGTTTATACAGTATATCTTGTTTGTAGCTAGTGCAAAAAGCAATCGTTGTCGTTTTCCATGAATCTTTTTAGCAACAGAAAGGATAAAAAAGGCACTTTTTCATTTAAAAGTTAAAGGAATCATCTGCGACATCAACTATGCTTCAATTAAATAAAAAATAAAAATCCCTGATTATGAGCCTAGTAGAAAAAAAAAATCATCTTATGTGTGCTTGCTTACCATTCATGGTGTCCCACCAAAATATAGTGTGTATATTCAGAACCCAAATATTTAAACATTTTGCTCACTCATTGTGTGTGGCATTAAGAAACAGCTAATGCTTTGACAGTTAACCTATCATCTATAAAATTAGAGAAGTTTGAAATTGGAGTGGAGGGCAGACATGACTAACACTGTTTCTATTAAGAAGCCACAGCAGTAAGGGTTATGTACTTAAGTGAATAAATTAAAGAGAAAAATGACCAAATGTGGTGCTTCTCAACTGGGGAGATAAATCAGAATTATCTGCAAGCTTTTCAAAAGCCTTGCGCAGGTCCACCCTAAACTACCAAATCAGTGTTTACACTGTGATCAGGAAGAGAAGCACAGTTTGAAAAATCTTCCCAAGAAAATCCTGACACATGTTGGCCCCTTCCTTGTGTCTCTTTCAGAAACTAGGCCAGAAATGAGAGGATTTGTGTCCTTATTAATTATGATCTTGACATAGTCACTTAATAATCTTTACCTCAAATCCTTCCTGTAAAAGCATCAGCATTCTCTAGATCACTTAGAGAACAAAATGAAACAATCAATAAGAAAACATGTTTGGTTCCAAATAGCACAGCATTCTTTTTTTATTTAAAAATACTAGTATTTTGAAGGACATGTTTTGTACCACTCTTTTGCACTGTGCTTTCTCTATATAAGGTACATAGTGTTCACTAATGAATATGATTTTAAAGGTTGTAAATAATAAAAAGTTCACTCAGCACTCAGTATGTTCCATATAACTTGAGTCACTTAAACACAGCTTGGCAATAAATAATAGACATTGGCTTGAAGGAGTTTAACAAAATAAACTATGCCTTTGTGAAAGTGAAGGGCTTCCCTGATAGCTCAGTTGGTAAAGAATCTGCCTGCAATGCAGGAGACCTGGGTTCAATTCCTGGGTCAGGAAGATCCCCTGGAGAAGGGATAGACTACCTACTCCAGTATGCTTGAGCTTCCCTTGTGGCTCAGCTGGTAAAGAATCCACCTGCAATGTGGGAGACCTGGGTTCGATTCCTGGGTTGAGAAGATCCCCTGGAGGAGGGAAAGGCTATGCTTTCTAGTATTCTGGCCTGGAGAATTCCATGGTCTGTATAGTCTATGGGGTTGCAAAGAGTCGGACACGACTGAGCCACTTGCACTTTCACTTTTCACTTGTGAAAGTGAAGTATTTCACAATGATACACGCAGATAAGAGAGAAAATGAACAAGTGCTTGTGTTTAGAATAGGGCATTTGATACATTAAGTTGGCTAGTGTTTCCAAAAGTATTTAATAGCCTTTGGACATGAACAGGTGAATGGATAAAGAAGATGTAGTATACACACACACACACACACACACGCAGACATATACATATATAATGGAATATTACTCGGCCATAAAAAAGAATGAAATAATGCCATTTGCAGCAATGTGGATGAACCTAGAGATTCTCATACTAAGTAAGCCAGACAGAGAAAGACAAATATCACGATATAGCTTATATGTGGAATCTAAAAATATGATACAAATGAACTTCTTTACAAAACAGAACTAGTTTCACAGATGTAGAAAATCAGGTTATGGTTACCAAAGGCGAAAGGAGGGGAGAGGAATAAATTAGGAGTTTGGGATCAAAATATACATACTACTATATATAAAACAGATAACCAACAAGGACTTACTGTATAACATGAGGAACTATACTCAATATTATATAACCAATAATGGAAAAGAATCTGAAAAAGAACATATATAACTGAATCACTTTGCTGTATACCAGAAAGTAACACAAAATTGTTAATCAACAATACTTATGAAAAAAAATTAGCCTTTGAAAGAAGAACATGAAAAATTCAGCTTCATGTGTTATTTCATGATTCAAAAATCTGAACTGATGGCACTGTTTTCTGATCTCATTCCTTACAG
Seq C2 exon
GTCTTTTACCTCTGCTTTCCTCTTCTCCATTGAAGTTCAAGTGACAATTGGATTTGGAGGGAGAATGATGACTGAGGAATGCCCTCTGGCTATCACAGTCCTGATTCTACAGAACATTGTGGGTTTGATCATCAATGCAGTCATGTTGGGCTGCATTTTCATGAAAACAGCCCAGGCTCACCGAAGGGCAGAAACCTTGATTTTCAGCCGCCATGCGGTAATCGCCGTCCGAAATGGCAAACTGTGTTTCATGTTCCGCGTTGGGGACCTAAGGAAAAGCATGATCATCAGTGCCTCTGTGCGCATCCAAGTGGTCAAGAAAACCACGACCCCAGAAGGCGAGGTGGTACCTATTCACCAACTGGACATTCCTGTTGACAACCCACTTGAGAGTAATAACATTTTCCTGGTGGCCCCTCTGATCATCTGCCATGTGATTGACAAGCGCAGCCCCTTGTACGATATCTCGGCCACTGACCTGGCCAACCAAGACCTGGAGGTCATCGTGATTCTAGAAGGAGTGGTCGAAACTACTGGCATTACTACACAAGCTAGAACCTCCTACATTGCTGAGGAGATCCAGTGGGGCCATCGCTTCGTGTCCATCGTGACCGAGGAGGAAGGCGTGTACTCTGTGGATTACTCCAAATTCGGCAACACCGTGAAAGTAGCTGCTCCAAGGTGCAGTGCCCGAGAGCTGGACGAGAAGCCTTCCATCCTTATCCAGACCCTCCAGAAGAGTGAATTGTCCCACCAGAATTCTCTAAGGAAGCGCAATTCCATGAGAAGAAACAATTCCATGAGGAGGAACAATTCCATCCGCCGGAACAATTCTTCCCTCATGGTGCCCAAGGTGCAATTTATGACTCCAGAGGGAAATCAGAACACTTCCGAATCCTGACAGCAAGACAACCCCCAGAAAGTCTTTGATCCGCTGTTGAAGAGTTTCTGCAGGGCATGGACATTGCACTGGAGCTGAAACACAATAGTTTGTCCTTGTTTATCTTATTACACTAAATGATACGCATATTCCAACAGCAGCACTTTCTGTGTCAATAAATGGTAACTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002551:ENSBTAT00000003307:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.170
Domain overlap (PFAM):
C1:
PF0100715=IRK=PU(25.6=70.4)
A:
NA
C2:
PF0100715=IRK=PD(74.1=84.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]