RnoINT0077855 @ rn6
Intron Retention
Gene
ENSRNOG00000013463 | Kcnj8
Description
potassium voltage-gated channel subfamily J member 8 [Source:RGD Symbol;Acc:2960]
Coordinates
chr4:176782498-176788186:-
Coord C1 exon
chr4:176787751-176788186
Coord A exon
chr4:176784314-176787750
Coord C2 exon
chr4:176782498-176784313
Length
3437 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TCTGATATCATTCCTTACAGGTC
3' ss Score
10.03
Exon sequences
Seq C1 exon
AGGACGCGTTGTGGAGGAAAGGAGTCAGGGCAGGTGCCTAGGCGGGCTATGCTGAAAGGAAGATGCTGGCCAGGAAGAGCATCATCCCGGAGGAGTATGTGCTGGCCCGCATCGCGGCGGAGAACCTGCGCAAACCGCGCATCCGCGACCGCCTCCCCAAAGCCCGCTTCATCGCCAAGAGCGGAGCCTGCAACCTGGCTCACAAGAACATCCGAGAGCAAGGTCGCTTCCTGCAGGACATCTTCACCACCTTGGTAGACCTGAAGTGGCGTCACACGCTGGTCATCTTCACCATGTCCTTCCTCTGCAGCTGGCTGCTCTTCGCTATCATGTGGTGGCTGGTGGCCTTCGCCCACGGGGACATCTATGCTTACATGGAGAAAGGCATCACGGAGAAGAGTGGCCTGGAGTCTGCCGTCTGTGTGACCAATGTCAG
Seq A exon
GTAAGAATGAAGTCGGGTGAGACAGCGGCTGGTCAATTGTGAAATAAAAGGTTTTCACTGGACAGTTCAGGAACGAAAAGCAAATCTGGGTTGCAGGGTTGGGGCTAATACGTTAAAGTCTTTGTAAATGTAGTTTTATGGGTATTTCTGAGAATGTGCGGCTGCTTCTTTGTGCTAACCTCATGGGTTCGAAGAATTCTTGACCCCCCCAAATAAAACAGTTCGTTTTCACTCCAAGGATGTCCAGTGTGCCCCAGAAAATATCTCCAGTCAATCAAAAGCATTGTGCAAATACAAGAAATATTTTTCTGTAAAGCATTTTTAACTTTAAAATACACTAAAAGTAAGATAATTGAAATAAACATAAGCCTTTTCTTATCAAGGTTATTTTAGCATATCTGACAGATTGTTTCAGATTTTAAAAATTAAAGCTTATTCTAAACTTTAGAAGAGACGGTTTTAGTGAGAATCGGTGCAGGTTTTCACGAAAGAGGCTGAGTAACCACGAGTGCATATTGAAGTATCTTTCCACAGCTTCCACAGAATAGGAACAGGACAGCTTTTAGGTCACCTAACCTTGACTTCTGCAAATAGGGATGTTTCAAAGACCGCTAACTTGCATTTGGTTTTCGCAGCTCTCTTTTGTATTCCCATGAGGCAGGCCCCAAACATTGCAACAAGGCAAATTTTTTAAATTTGTTTCTTTGGGTGGGGACCTAATTTATATCAATTGCAAAAAATGATATAAATAAAATAAAACCGTAATAACATTGGGAAAAATTCCAGGGTGTTTTCTGAATCCTAGTCCGAATTCACATGATTCATGAGGCAGAGAGATGGAAGACACATCATCCAGCCAGGGAAACTGATAAGAACGAGACTTTCAGTGGTCCTGAACCTATAAAAGTATCAGAGCATGGCATGGCCAGGAGCTGAGTTTCTCATGATCTTACCTATGCTCCTTCCATTTGGCCAAGTAACTGCCAGGTCAGCGTGTCAAGGACAGAGGTCACCTGAGACCACACAGCTCAGATTTGGCTAGAGAGCAATGTACTAGACTGATCTAAGGCTTTACCCTTGGGCAGATAGGACTGTCTTTCCTCAAGCTTTTGCCTCAGTGACAATGTGAATAAGAAGCCCAGGTGAGCAGACAACCAGGGACACAGAGAACAAAGCCCTCTTTGTGTTTCAACGCTTCTAATGTGTTTGAGAGATTTGAAGTTAATGTTATTGTAATGGTGTGTCTCTTGCACTTACTGGCATTGACAGGGCTGGTGAGGGCATTCACATTCAAACAAGTTTCCAGTAAACAGGAAAGGAAAAGGTCCTGACAAAGGCAAGTAGGAAAAATGATCATGGCAACCTTGAAAACAAACTAATTTTACTCAAGGCGATCTATCATCACTATTTATGAAAATTTTACTCTTCTGGTAAATTTAAATATTGAAAGAGATTGTTCTTTCTAGGATGCTTTCTAGGAAGAGAATTTTATAGCAATCGCTGGTTTCTAAAACCTGCTTCTTGTTACTTCTTATCCAAAGAAGATATTCTGAAGAATATTTATTTCCTAGATGCATTCCTAATGGTGTTAAGCTGTGAGGAATGGTGTCAAAACTACAGTGAAGCAAAGGTGACTTCATCAACCTAACAGTGCTAGCTTTTAGATCACGCTCCTTAGTATACGTAAAGCCTATTGTCTTCCTAGAGAACTTTGAAGACGTACATAACTCTAATTGCTTGTTTTCCATTTCTTTTATAAATTCAATGTCAGGCAAATCATCAAATGTGGAAGCAACTTTTCCTCAGTGGCTGTCCAGCAGTATTTCCAAAGTTGCTTGGCTGCTCTCACTTAAGGGTGGCACATTTTCTCCTTTGTGCAGACGACTTTGCAACATGAGTCAGAAAATAGAAACAATGTTATTTTCCTCATTATTATTCAGCTGACGCTCTGCCCTCATCCCTTCTCCATTGAAGGCTTTTTTTTTCCACTTGAGATTGTGAGACAGGTGTCCAGAAAATATTGTTCTTATTCTGGATAGAGAAATTGAATTAATTGATTAATTGTTAATTGAATTAAACAATATTAAAAACACGGTTCAGGAACCATCTCCCAAGCCATGGACAGACATGGGACTCTTCTCTGACATACAAACCATTGTTAAACTCAGTGTTAGATGTGCACCCTCTTCTGAGGCCTGTTTCTACTGTCTGTGTGTTTCCCATCCATGCCACATATCTCAGGGTGTGTAAGGAGGGCAGAAGTCAATTCTTAGAGTTTTGCATGGACTGTTTTAGCCACAACAGAGATAAAGGGCTCTTTTCCTACCCCACTTGAAAGCAGATGGATGTGTGTGGACTCACACACTCTCCTGGCTTCCTGCCAAAGGGCAGCATGTATTGAGTGCTCAAATTCAAATGTTTGGTTTTCTCATTGTGCCTGGTATTCATAGATAATATTTTGACAGACTGTAATGTATGGTTTCTCTCCTATGAAGTTAGCGAAGTGTGGACCTGGGGTGAGTGTCAGGAATAGCGGCTGTGAAGAAGCCCCAGCAGTCCTGGGTATGCAGCCAGGCGAGTAATTTGCTAACAACAAAATGTGACTCTTCTCAGCCAGAGATTAAACAAAATTACCCAGGACTCACTCAAGTCCAGCAGGAGCCCTCCAAACCCTTGTCTATTCACTTAGATGCGGAGATGTACAACCAGAAAACACCTTCCCAAGAAAATCCTGACACCAGTTAGCTCTTTCCCCTTGCTCCTTTGAGAACAGCAGGCCAGATCTGACAGGACTCACGGATGTAGTCATTATGTATACATAGTTTTTGGGTCACATGAAAAACAAGATAATCAATAAAAACTTCTCCAAATGGAAAAAAACCCAACTCTCCTTATTAAAATACAAATGTTTTCTGGATGACATGTTTTACACCATGTTTTACCACTGTACTGGATTTTGTAAACAGGACAACCAATTACTGGATAATGACTATAATTCCAGAAGCTACAAATAATACAACATTCAGCCATTACCCAGTAGCTTCCATATGAACTCAAGTCTCTCAAACACAAGTAGGTAATAAATAACACTAGCTAGTAGAAAATTCCAGAAAGTAAGTTAGGCTTTGGTAAATGTGAAATATATCTACAATTTATATTTAGTTGTTTTTTTTATAAATGTCTTCACATGGTATATGATCTAGGAAGCATACAAATGGAAAAGGAGAGAGGAGGGGAGAAAGAGAGAAAGGGAGAGGGAGAGGATGTCAGAAGGTTGTGGGAGAGAGGAGGGAGGGAGAAAGGAGTGGGGAGGGTGCTTGTATTAAAAACGAATCTTTCCCAAGTCACTAGGCTGTAGTAGCAAGCGTGGCTCCTCCTGGGCACTTTCCACCACGCCCACGCTGACCTGGCGTTATTTCTGATATCATTCCTTACAG
Seq C2 exon
GTCATTCACTTCTGCGTTTCTCTTCTCCATCGAGGTTCAAGTGACCATTGGGTTTGGAGGGAGAATGATGACTGAGGAGTGCCCTCTGGCCATCACGGTTTTGATTCTGCAGAACATTGTGGGTCTGATCATCAACGCGGTCATGTTGGGCTGCATCTTCATGAAGACGGCCCAGGCCCACAGAAGGGCAGAGACGCTGATTTTCAGCCGCCATGCTGTAATTGCGGTCCGTAATGGCAAGCTGTGCTTCATGTTCCGGGTGGGTGACCTGAGGAAAAGCATGATCATTAGCGCCTCGGTGCGCATCCAGGTGGTCAAGAAAACCACGACGCCAGAAGGAGAGGTGGTGCCTATTCACCAGCAGGACATCCCTGTGGATAATCCCATCGAGAGCAATAACATCTTCCTAGTGGCCCCTTTGATCATCTGCCATGTGATTGATAAGCGTAGCCCCCTGTACGATATCTCAGCCACTGACCTTGTCAACCAAGACCTGGAGGTCATAGTGATTCTCGAGGGCGTGGTGGAAACCACGGGCATCACCACGCAAGCGCGGACCTCCTACATTGCAGAGGAGATCCAGTGGGGACACCGCTTCGTGTCGATTGTGACTGAGGAGGAGGGAGTGTACTCTGTGGACTATTCTAAATTTGGTAATACTGTGAGAGTGGCGGCGCCAAGATGCAGTGCCCGGGAGCTGGACGAGAAACCTTCCATCTTGATTCAGACCCTCCAAAAGAGTGAACTGTCGCACCAGAATTCTCTGAGGAAGCGCAACTCTATGAGAAGAAACAACTCCATGAGGAGGAGCAACTCCATCCGGAGGAATAACTCTTCCCTCATGGTGCCCAAGGTGCAATTCATGACTCCAGAAGGAAACCAGTGCCCATCAGAATCATGAGGGCAGGACGACCCTAGACAGCCACTCACTGAGTCCCGATGACTGACAGACCATCCTGAGACAGTTTGCTGAGTTCTGGTGATCGAAGTATCGGACCTGTCGCCAATTCAGGGCAGGAACACAACAGTATTCGTATTTTAAGGCACTGAAAAATATTCATATTTGAGAAATTAAACCTCTTGAATAAATAAACAATAGCACACAAAGCAGAGGGCTCGCGGCTCACACTTGTTTCCTCACACAGACTGCCGCAGCAGCGACACTTTTAGACATTTTTAGAGGCATGGAGTCACATAAAGATGATATCACCTTCTAAGATCCCTGCTCAGGTCTGTGGCCAAAGACAACCACAGTTTTCCCTTTCCTATTCTGTTTATTTGGGTTTTGGTTTGAAGCATTCTTTTTGGCTTGTCTTTCTGAGTTTGGGTTGCCATAGAAACCTGAGCCCTTCCTCTCTGATCCTCCTCTCATCTGGAAACTCTGTTTTCTTCCCAGCAGCCTTTGCCGTCTGAGTCAGTTGGCCTGCATGTCTGAGCTTCTGTCACTTAGCAGAGATGAGATCTTCTACCAGAGCCCAGGTTCATCCCCCTTAACTCCTGAGCCCTCAAGTAAGGGCAGAGTAGAGAGATGTCCTGAATTAACACAGTGTGTGGTGTGGTAAAACATGGAAACTAGGCAGTTGTGTAGCCTTTTAGTCAGAGTTTGGGGCTTGAATTTATTTCATATATGAGCCATTGGACCTCACAGGTCATCGGGAATATGTTCAAATCTAACCTTAAAAGACACATGATTCTAACCAGGTGGGCTAAGTTGACTGCTCCCAAGAAATCTGTGACTTGGAACTCTAGACTCAAAGATCAAACGGGTACTTGCAGCTCTGCTTGCCTGTTTAATAAAGTTCTCAAAACCCACTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013463:ENSRNOT00000018057:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.173
Domain overlap (PFAM):
C1:
PF0100715=IRK=PU(25.6=70.4)
A:
NA
C2:
PF0100715=IRK=PD(74.1=84.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]