DreINT0084920 @ danRer10
Intron Retention
Gene
ENSDARG00000045589 | kcnj8
Description
potassium inwardly-rectifying channel, subfamily J, member 8 [Source:ZFIN;Acc:ZDB-GENE-060308-1]
Coordinates
chr4:14718747-14721099:+
Coord C1 exon
chr4:14718747-14719096
Coord A exon
chr4:14719097-14720198
Coord C2 exon
chr4:14720199-14721099
Length
1102 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
ATGTTTTTTTTTCCTTCCAGCTC
3' ss Score
11.4
Exon sequences
Seq C1 exon
ATGTTGCCGCGGAAGAGCATCATCCCGGAGGAGTTCGCGCTGCCGGCGCTGGTGTCCCGGGTGCCGCGTAAACCAGTGTTCAGAGACCGCGTGAATAAAGCGCGCTTCATCGCCAAGAGCGGCGCGTGTAACTTGGCGCACAAGAACATCCGTGAGCAGGGCCGGTTCCTGCAGGACGTCTTCACCACTCTGGTGGATCTGAAGTGGCGCTTCACGCTGGTCATCTTCACCATGACATTTCTGTGCAGCTGGCTGCTGTTCGCCATGAGCTGGTGGCTGGTGGCCTTCGGGCACGGAGATCTGGACACCGACCGTAAACCTGCCGTGGAGCAGTGCGTCACCAATGTCAA
Seq A exon
GTGAGTGCCGTTGACTTGATTGCATGTGCAGATGTCCAAAACATGTCTATCCTCCTGTTTTGTATCTGTAGCCTATAAAACTGTTGCAAACTGATGACATATTTCATTTTATAACCTAGCCTATTTTTAAGGTATTTTATCTTCTTTTTTTTTTTAAGAAAATATACGTTTTAGGAAAATGTTTTTGTCAATACGTGGAAATATATATTTTTTATATTCAAAATAATAATTATTAAAATTATTCATTTATGGTGAATGTAATAAAAATCCAATTTAAGCAGTTTTAAAAATTATTCATAACATTGTTAAATACTTATATTAAAGGGGGAAATTACCGTCATAAATTAAGTTTAACTTTGGCATTTTATAATCATAAATGTATAACAAATATTATATCACAATATTGATAGGCCTTTTATAAATGTCATGTAATGATAATTAAATTTGTAGCAAATAAAAATTAGATTACTAAAAGTTAAAAACACTACAATATTATTGCGTTGGAGCTTTAATAAACTTTATAATGCAAAAACAACATTACACGCATATTAATATACTGTTCTGTGTCAGTTAAATCAGTTGACTGTTGAAATTTTTATCCCAACTAGTTGAGTAATTAAACAAATACCCCAATAAAGGTTAAAAATAACCAAACAAAGCACCAGATATTTAACCCAATGGTTCAGTTATTAAATAAATAACCCAATAAAGGTTAAAAATAACCCAACAAAGCACCAGATATTTTAAACTCAACCAATGGATTGAATAAATAATAGAACGTTATTTAGAGATTGTATATTATAATACTATCTAATATATATATATATATATGATCTTATAATATAATTATGAAGCCATTATATTAAATGTAGATTTTATACAAAAATAATTCAACTAAAATTGCTAAATAAAATCCAAATTAACAAAACCAAATAAAAAAAAGACAAATCTAAATGTATAATAAAGTAATAACAGTAATTAAGGCAATTGTGTATTTTTTTTTACATATGGGCCATATAATTTAGGTCAAATTATTAGGTTGTTTTATTCCATGTGGATGTTATTTCTGCCGCCTAAAACTGATGTTTTTTTTTCCTTCCAG
Seq C2 exon
CTCTTTCACCTCTGCCTTCCTGTTCTCCATCGAGGTGCAGGTGACTATAGGTTTCGGAGGGCGTATGATAACAGAGCGGTGTCCCATCGCCATCGCCTTTCTCATATTGCAGAACATCATTGGCTTGATAATAAATGCCGTCATGCTTGGCTGCATCTTTATGAAGACCGCTCAATCCCACCGGCGTGCCGAAACCCTTATCTTTAGCCGACACGCAGTCATCGCTGTGCGCAACAACCGCCTCTGCTTTATGATCCGAGTGGGCGACCTGCGCAAAAGCATGATCATCAATGCAGTTGTGCGCCTCCAAGTGGTCCGGAAGACCATGACCCCAGAGGGCGAGGTCATCCCCATCCAGCAGATCGATGTCCAGACTGAGAGTGCAGTGGCTGGTAACAGCATCTTTCTTCTGGCACCCTTGATCATATGTCATGTCATTGATAAAGACAGTCCTCTGTACGATCTGTCGGCGATGGAGCTGCAGTGCAGTGATCTGGAGGTCATCGTGATCCTGGAAGGAGTGGTGGAGACCACAGGCATCACCACTCAGGCTCGCACCTCCTACGTGACCGAGGAGATCCAGTGGGGACACAGATTCGTGCCTATAGTGACAGAGGAAGAGGGTGTCTACTCAGTGGACTACTCCAAGTTCGGGAATACAGTCAAAGTGGCCACCCCTCGCTGCAGCGCTCGTGAGCTGGACGAGAAACCCTCCATCCTGATCCAGACGCTGCAGAAGAGCGAGCTTTCACACCAGAACTCTCTGCGCAAGAGGAACTCTATGCGCAGGAACAACTCCATGCGCAAGGGCAACTCCATGCGGCGCAATAATTCAGCTCTCGCTGTGCCCAAAGTGCAGTTCCTCACCCCTGAGGGCGGAGCCAATCTAGCGGTCACATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045589:ENSDART00000067031:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.120
Domain overlap (PFAM):
C1:
PF0100715=IRK=PU(23.8=68.4)
A:
NA
C2:
PF0100715=IRK=PD(75.9=84.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGACCGCGTGAATAAAGCG
R:
CCGCTCTGTTATCATACGCCC
Band lengths:
348-1450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]