GgaEX0021202 @ galGal3
Exon Skipping
Gene
ENSGALG00000014463 | ACTN2_CHICK
Description
NA
Coordinates
chr3:39135897-39143255:-
Coord C1 exon
chr3:39143174-39143255
Coord A exon
chr3:39138616-39138701
Coord C2 exon
chr3:39135897-39135989
Length
86 bp
Sequences
Splice sites
3' ss Seq
ACCCTTTTCTTTCTACACAGATG
3' ss Score
11.25
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GATGACCCCATAGGAAATATCAACCTTGCCATGGAAATTGCTGAGAAACATCTGGATATCCCTAAGATGTTGGATGCAGAAG
Seq A exon
ATGTAGTAAACACTGCCAGACCTGACGAAAGAACCATTATGACTTATGTTTCCTGTTACTACCATGCATTTGCTGGTGCTCAGAAG
Seq C2 exon
GCTGAGACTGCAGCAAACCGGATCTGTAAGGTGCTTGCTGTGAATCAAGAAAATGAGAGGTTGATGGAAGAGTATGAGAGACTTGCAAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014463-'10-11,'10-9,11-11
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.065
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(26.0=100)
A:
PF0030726=CH=PD(23.1=82.8)
C2:
PF0043516=Spectrin=PU(9.9=35.5)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCATAGGAAATATCAACCTTGC
R:
ACTTGCAAGTCTCTCATACTCTTCC
Band lengths:
168-254
Functional annotations
There are 0 annotated functions for this event