DreEX0010950 @ danRer10
Exon Skipping
Gene
ENSDARG00000071090 | actn2b
Description
actinin, alpha 2b [Source:ZFIN;Acc:ZDB-GENE-051127-39]
Coordinates
chr17:20113198-20114886:-
Coord C1 exon
chr17:20114805-20114886
Coord A exon
chr17:20114417-20114502
Coord C2 exon
chr17:20113198-20113290
Length
86 bp
Sequences
Splice sites
3' ss Seq
ATATTGCTTTTGCTTCTCAGTCC
3' ss Score
6.86
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GATGATCCACTGGGTAATTTAAATCTGGCATTTGACATTGCTGAAAAACATCTGGACATCCCCAAAATGCTGGATGCAGAGG
Seq A exon
TCCTGGTTAGCAGCCAAAGGCCAGATGAGAGGACAGTCATGACATATATTTCCAGTTATTATCACACCTTTGCTGAGGCTCAGAAG
Seq C2 exon
GCTGAAACTGCTGCGAACAGGATCTGTAAGGTGCTTGGAGTGAATCAGGAAAATGAGAAGTTGATGGAGGATTATGAAAGGCTGGCTAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071090_MULTIEX2-8/9=7-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.034 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(26.0=100)
A:
PF0030726=CH=PD(23.1=82.8)
C2:
PF0043516=Spectrin=PU(9.9=35.5)
Main Inclusion Isoform:
ENSDART00000138911fB970
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACTGGGTAATTTAAATCTGGCA
R:
CACTAGCCAGCCTTTCATAATCCT
Band lengths:
168-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]