GgaEX0021203 @ galGal3
Exon Skipping
Gene
ENSGALG00000014463 | ACTN2_CHICK
Description
NA
Coordinates
chr3:39135897-39143255:-
Coord C1 exon
chr3:39143174-39143255
Coord A exon
chr3:39137423-39137508
Coord C2 exon
chr3:39135897-39135989
Length
86 bp
Sequences
Splice sites
3' ss Seq
ATTTCTCCCCAATATTATAGATA
3' ss Score
7.32
5' ss Seq
CAGGTATTA
5' ss Score
7.26
Exon sequences
Seq C1 exon
GATGACCCCATAGGAAATATCAACCTTGCCATGGAAATTGCTGAGAAACATCTGGATATCCCTAAGATGTTGGATGCAGAAG
Seq A exon
ATATTGTGAACACTCCCAAACCTGATGAGAGAGCTATCATGACATATGTGTCCTGCTTCTACCATGCTTTTGCTGGAGCAGAGCAG
Seq C2 exon
GCTGAGACTGCAGCAAACCGGATCTGTAAGGTGCTTGCTGTGAATCAAGAAAATGAGAGGTTGATGGAAGAGTATGAGAGACTTGCAAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014463-'10-11,'10-10,12-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.033 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(26.0=100)
A:
PF0030726=CH=PD(23.1=82.8)
C2:
PF0043516=Spectrin=PU(9.9=35.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCATAGGAAATATCAACCTTGC
R:
ACTTGCAAGTCTCTCATACTCTTCC
Band lengths:
168-254
Functional annotations
There are 0 annotated functions for this event